Download Resources

Download Data Files are described in detail in their associated README documents.

	GO Annotations File
	The gene_association.aspgd file contains the Aspergillus Gene Ontology (GO) curation from AspGD. Please note that this file contains ALL of the AspGD GO curation from AspGD, whereas the gene_association file that is available on the GO consortium (GOC) web site, http://www.geneontology.org/, has been filtered according to GOC guidelines. Download the File\|View the README
	Chromosomal Feature File
	The chromosomal_feature file contains information such as names and aliases (synonyms), descriptions, and any S. cerevisiae orthologs for the chromosomal features (including protein-encoding and non-coding genes) in AspGD. The information for each curated species in AspGD is contained in a separate chromosomal_feature file. Go to the Download Directory\|View the README
	Phenotype Annotations File
	The phenotype file contains all of the mutant phenotype annotations. The phenotype information for each curated species in AspGD is contained in a separate file. Go to the Download Directory\|View the README
	Sequence Files
	Chromosome, ORF, protein, and intergenic sequence files for several Aspergillus and related strains and species are available for download from this directory. Current sequence data and archived sequence data from previous assemblies of the genome sequence are available. Go to the Sequence Download Directory\|View the README
	Datasets archived at AspGD
	Access large-scale datasets from the AspGD web site. View the index\|Browse the Download Directory
	GFF files
	This directory contains files with information about the features in AspGD and features in historic versions of the genome assembly in Generic Feature Format (GFF), which is the format used for display in the GBrowse Genome Browser in AspGD. Go to the Directory\|View the README
	Orthologs and Best Hits
	The Orthologs directory contains the mappings between AspGD genes and predicted orthologs among the Aspergilli and in S. cerevisiae. The Best Hits directory contains mappings between genes at a level of similarity below that required by the strict criteria used to determine orthology. Go to the Orthologs Directory\|Go to the Best Hits Directory
	Protein Domain Predictions
	Output of IprScan domain predictions for all AspGD proteins. Go to the Domains Directory\| View the README
	Images and Movies
	Still images and movies that have been submitted to AspGD to be made available for public download. Go to the Directory\|View the README
	Batch Download Tool
	Simultaneous retrieval of multiple types of data for a list of gene or feature names Go to the Batch Download Tool page
	Browse Downloads
	Browse the Download directories on the AspGD web site. Go to the top-level directory


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AspGD Copyright © 2008-2013 The Board of Trustees, Leland Stanford Junior University, and Broad Institute.
Permission to use the information contained in this database was given by the researchers/institutes who contributed or published the information. Users of the database are solely responsible for compliance with any copyright restrictions, including those applying to the author abstracts. Documents from this server are provided "AS-IS" without any warranty, expressed or implied.
To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2013). The Aspergillus Genome Database (AspGD): multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res. 42(Database issue):D705-D710; see How to cite AspGD.

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