External Resources


 



circle  Aspergillus Resources

Aspergillus Genomes by the Central Aspergillus Data REpository (CADRE) and The Aspergillus Website
Annotated genes from multiple genomes, including A. fumigatus AF293, A. fumigatus A1163, A. clavatus, N. fischeri, A. nidulans, A. niger, A. oryzae, and A. terreus.

Aspergillus Genetic Information
Aspergillus home page at the Fungal Genetics Stock Center (FGSC).

The Aspergillus nidulans Linkage Map
John Clutterbuck's web site at the University of Glasgow, with A. nidulans linkage data and maps, gene lists and functional information, strain information, and references

The Central Aspergillus Data REpository (CADRE)
Aspergillus genes and genome assemblies: A. fumigatus AF293, A. fumigatus A1163, A. nidulans FGSC A4, A. oryzae RIB40, A. niger CIB 513.88, N. fischeri NRRL 181, A. clavatus NRRL 1, and A. terreus NIH 2624.

The Aspergillus Website
Genomic information on the fungal pathogen Aspergillus fumigatus and clinical information on aspergillosis.

The Aspergillus Genomic Online Community
Forum/group hosted by the Aspergillus Website as a communication point for the Aspergillus genomic community.

Aspergillus Comparative Database
Genome sequence, annotation, and tools at the Broad Institute; includes A. fumigatus, A. flavus, A. nidulans, A. niger, A. terreus, A. oryzae, N. fischeri, A. clavatus.

Aspergillus nidulans Sequence Data at NCBI
Sequence traces deposited at NCBI's trace archive for:
Aspergillus nidulans. Data also available by FTP from NCBI.
Aspergillus flavus. Data also available by FTP from NCBI.
Aspergillus fumigatus. Data also available by FTP from NCBI.
Aspergillus niger ATCC 1015. Data also available by FTP from NCBI.
Aspergillus terreus. Data also available by FTP from NCBI.
Aspergillus terreus ATCC 32359. Data also available by FTP from NCBI.
Neosartorya fischeri NRRL 1. Data also available by FTP from NCBI.


Aspergillus nidulans Gene Knock-Out Cassettes from the FGSC
The Fungal Genetic Stock Center (FGSC) can provide DNA suitable for transformation or amplification. A spreadsheet listing the cassettes and primers is available for download, and more information is available on the FGSC web site.

Aspergillus fumigatus Genome Project at the Sanger Institute
Sequencing and annotation of the A. fumigatus genome, performed at the Sanger Institute.

Aspergillus fumigatus GeneDB
Gene and gene product information for A. fumigatus, hosted by the Sanger Institute.

CADRE Aspergillus Metabolic Pathway Database
View and search metabolic pathways for several Aspergillus species, provided by CADRE and the Aspergillus Website. Pathways were predicted using Pathway Tools software, and some have been manually edited.

Aspergillus Genome Project at JCVI
Sequencing and automated annotation of A. terreus, Neosartorya fischeri, and A. clavatus at the J. Craig Venter Institute (JCVI).

Aspergillus niger Genome Project at JGI
Sequence and annotation of the A. niger genome, performed at the DOE Joint Genome Institute (JGI).

Aspergillus oryzae Genome Project at NITE
Sequence and annotation of the A. oryzae genome, performed at the National Institute of Technology and Evaluation (NITE), Japan.

Cosmid and cDNA sequencing
Aspergillus nidulans, Aspergillus parasiticus, and Neurospora crassa data, available for searching and download from the University of Oklahoma.

Gene Index Project
A. nidulans and A. flavus EST and gene information from the Computational Biology and Functional Genomics Laboratory at the Dana-Farber Cancer Institute and Harvard School of Public Health

e-Fungi
Query and download of bulk genomic data and annotation.

Aspergillus Genome Resources
Aspergillus information gateway page at the National Center for Biotechnology Information (NCBI).


circle  Analysis Tools

Bioinformatics and Sequence Analysis Tools
Tools on the web site of the Center for Biological Sequence Analysis at the Technical University of Denmark. Gene-finding, RNA splicing, protein modification, protein sorting predictions, and more.

Regulatory Sequence Analysis (RSA) Tools
Tools for analysis of nucleotide sequence; several Aspergillus genomes available.

Multi-genome Analysis of Positions and Patterns of Elements of Regulation (MAPPER)
Tools for prediction of transcription factor binding sites.

Fungal Genomes BLAST at SGD
BLAST search for sequence similarity within fungal genomes, provided by the Saccharomyces Genome Database.

Microbial Genomes BLAST at NCBI
BLAST search for sequence similarity within microbial genomes.


circle  Medical Mycology Resources

Aspergillosis Information at the CDC
Aspergillus page on the web site of the Division of Foodborne, Bacterial and Mycotic Diseases (DFBMD) at the Centers for Disease Control and Prevention (CDC).

The Aspergillus Website
Clinical information on aspergillosis for patients and educators, as well as information for scientists.


circle  Other Fungal Information

Fungal Genetics Stock Center
General fungal information, focusing on filamentous fungi; has links to many fungal genome projects.

Candida Genome Database
Genome, gene, and protein information for Candida albicans.

Saccharomyces Genome Database
Genome, gene, and protein information for the model yeast Saccharomyces cerevisiae.

The Fungal Genome Initiative (FGI)
Sequence and analysis at the Broad Institute.

The Genolevures Consortium
Sequence and annotation for hemiascomycete yeasts.


circle  Other Resources

GenBank
Sequence repository at the NCBI, Bethesda, Maryland, USA.

EMBL
Sequence repository at the EBI, Hinxton Hall, Cambridge, UK.

DDBJ
Sequence repository at Mishima, Japan.

GenePalette
Software application, freely available to academic users, for visualizing annotated features and other sequence elements in GenBank sequences.

PredictProtein
Program for protein structure prediction, from the Protein Design Group at EMBL.

Gene Ontology
Gene Ontology (GO) Consortium home page.

KEGG
Metabolic reactions and pathways from Kyoto University, Kyoto, Japan.

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