AspGD Search Options

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All the search options listed below search for information within the Aspergillus Genome Database

X  AspGD Basic Searches
Note: All searches are case insensitive; wildcard character (*) ok; only last names of colleagues are searched
 
AspGD Quick Search:
Use a keyword to simultaneously search by major categories of information in AspGD (gene name, locus description, GO terms, basic phenotype information, locus summary notes, colleagues, authors, orthologs and best hits in S. cerevisiae, S. pombe, and other Aspergillus species, PubMed IDs, and GO IDs. Examples: 'VeA', 'AN1052', 'transcription', 'Smith'. The asterisk character (*) may be used as a wild card.
 
AspGD Text Search:
Use a keyword to simultaneously search all of the categories of information in AspGD that are included in the Quick Search, plus locus history notes, gene name descriptions, and abstracts.
 
X  AspGD Advanced Searches

Advanced Search
Find a chromosomal feature (e.g., gene, ORF) based on selected criteria (e.g., chromosome number, GO-Slim terms, etc.)
Expanded Phenotype Search
Search the text of all phenotype information to find phenotypes of interest and view the genes associated with them, or browse the entire list of phenotype terms
GO Slim Mapper
This tool determines to which GO-slim terms a set of Aspergillus genes is annotated
GO Term Finder
This tool determines the signficant GO terms that a set of Aspergillus genes shares in common
Batch Download
Simultaneous retrieval of multiple types of data for a list of gene or feature names

X  Specialized Gene and Sequence Searches

Gene/Sequence Resources (Get Sequence)
Retrieve, display, and analyze a gene or sequence in many ways, such as protein translation and restriction mapping

BLAST
Compare any query sequence against various Aspergillus datasets

Sybil: Comparative Genomics Tool
Search and analyze comparative genomics data from 10 Aspergillus species

GBrowse Genome Browser
for
A. nidulans FGSC A4
for A. fumigatus Af293
for A. niger CBS 513.88
for A. oryzae RIB40
View and navigate genomic sequence

JBrowse Large-Scale Data Browser
for
A. nidulans FGSC A4
for A. fumigatus Af293
for A. niger CBS 513.88
for A. oryzae RIB40
View and navigate large-scale data, including RNA-Seq

GenomeView Large-Scale Data Browser Please note: GenomeView may take a long time to load, and it displays incompatibilities with some web browsers and versions of Java.
for
A. nidulans FGSC A4 RNA-Seq
for A. fumigatus Af293 RNA-Seq
for A. fumigatus Af293 genomic variation
for A. niger CBS 513.88 RNA-Seq
for A. oryzae RIB40 RNA-Seq
View and navigate large-scale data

Chromosome History Search
View the complete sequence and annotation history of each chromosome

Summary of Genome Versions
View the complete history of sequence and annotation changes for each genome

Pattern Matching
Locate DNA or protein sequence patterns

Design Primers
Design sequencing and PCR primers

Restriction Analysis
Display the restriction map for a sequence

X  Search Orthologs and Best Hits:

Search orthologs or best hits to S. cerevisiae genes or genes in other Aspergillus species by gene name. Case insensitive and wildcard character (*) searches are allowed.
 
X  Search AspGD Web Pages



X    Search Aspergillus Literature

Search Literature in AspGD
View AspGD's annotated literature guide for any gene

List of genome-wide analysis papers
Link to a list of genome-wide analysis papers (e.g., microarray analysis publications) stored in AspGD

X  Search Colleague Information

Search AspGD Colleagues
Search contact information submitted to AspGD by Aspergillus researchers

Aspergillus Laboratories
Links to PIs of laboratories that study Aspergillus

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