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Search Options
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View all,
Advanced Search,
Get Sequence,
Multispecies Aspergillus BLAST,
A. nidulans BLAST,
A. nidulans GBrowse,
A. fumigatus GBrowse,
Sybil (Orthologs & more),
PatMatch,
Primers,
Search AspGD web pages,
Global Gene Hunter,
Search Literature,
and more.
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Help Resources
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View all.
Getting Started,
Sitemap, FAQ,
and more.
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GO Resources
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View all,
SGD GO Tutorial,
What is GO?,
GO Slim Mapper,
GO Term Finder,
and more.
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Community Resources
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Search AspGD colleagues,
Find Aspergillus labs,
Meetings & Courses,
Community News,
Nomenclature Guide,
Highlighted Topics,
Images & Movies,
Methods & Protocols,
Job Opportunities.
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Submit Data
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View all,
Colleague update,
Contact AspGD,
and more.
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Download Data
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View all,
Batch Download,
GO Annotations File (README),
Chromosomal
Feature File (README),
Sequence (README),
and more.
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External Resources
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External Resources.
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About AspGD
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Genome Snapshot,
Citing AspGD,
AspGD Staff,
Contact AspGD.
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AspGD Search Options
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| All the search
options listed below search for information within the Aspergillus Genome Database (*with
the exception of Global Gene Hunter, which searches other databases as
well) |
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 AspGD Basic Searches
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| Note: All searches are case insensitive; wildcard
character (*) ok; only last names of colleagues are searched |
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| AspGD Quick Search: | |
| Use a keyword to simultaneously
search by major categories of information in AspGD (gene name,
locus description, GO
terms, basic phenotype information, locus summary notes, colleagues, authors, S. cerevisiae orthologs
and best hits, PubMed IDs, and GO IDs. Examples: 'VeA', 'AN1052', 'transcription', 'Smith'. The asterisk character (*) may be used as a wild card.
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| AspGD Text
Search: |
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| Use a keyword to simultaneously
search all of the categories of information in AspGD that are
included in the Quick Search, plus Locus History Notes, gene name descriptions, and abstracts.
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| AspGD Advanced Searches |
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Advanced
Search
Find a chromosomal feature (e.g., gene, ORF) based on selected criteria (e.g., chromosome
number, GO-Slim terms, etc.) |
Expanded Phenotype
Search
Search the text of all phenotype
information to find phenotypes of interest and view the genes
associated with them, or browse the entire list of phenotype terms |
GO Slim Mapper
This tool determines to
which GO-slim terms a set of Aspergillus genes is annotated |
GO Term Finder
This tool determines the signficant GO terms that a set of Aspergillus genes shares in common |
Batch Download
Simultaneous retrieval of multiple types of data for a list of gene or feature names
Specialized Gene
and Sequence Searches
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Gene/Sequence Resources (Get Sequence)
Retrieve, display, and analyze a gene or
sequence in many ways, such as protein translation and
restriction mapping
BLAST
Compare any query sequence against various
Aspergillus datasets
Sybil: Comparative Genomics Tool
Search and analyze comparative genomics data from 10 Aspergillus species
GBrowse Genome Browser
for A. nidulans FGSC A4
for A. fumigatus Af293
View and navigate genomic sequence
Chromosome History Search
View the complete sequence and annotation
history of each chromosome
Pattern Matching
Locate DNA or protein sequence patterns
Design Primers
Design sequencing and PCR primers
Restriction Analysis
Display the restriction map for a sequence
Global
Gene Hunter * Searches other
databases in addition to AspGD
Find everything about an Aspergillus gene from multiple databases
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| Search S. cerevisiae Orthologs
and Best Hits: |
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Search orthologs or best
hits to S. cerevisiae
genes by SGD gene name. Case insensitive and wildcard character (*) searches
are allowed.
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| Search AspGD Web Pages |
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| Search Aspergillus Literature |
Search Literature in AspGD
View AspGD's annotated literature guide for any gene
List of genome-wide analysis papers
Link to a list of genome-wide analysis
papers (e.g., microarray analysis publications) stored in
AspGD
Search Colleague Information
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Search AspGD Colleagues
Search contact information submitted to
AspGD by Aspergillus researchers
Aspergillus Laboratories
Links to PIs of laboratories that study Aspergillus |
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Return to AspGD