A. niger An04g01800 Summary

Summary

Locus History

An04g01800 BASIC INFORMATION [ View References ]

Systematic Name, Reference Strain

An04g01800 (A. niger CBS 513.88)

Systematic Names Used in Other Strains

54609-mRNA (A. niger ATCC 1015)

Feature Type

ORF, Uncharacterized

Description

Ortholog(s) have endopeptidase activator activity and role in proteasomal ubiquitin-independent protein catabolic process, proteasome-mediated ubiquitin-dependent protein catabolic process (1)

Orthologous genes in Aspergillus species

A. oryzae RIB40 Ortholog(s) : AO090023000831
A. fumigatus Af293 Ortholog(s) : Afu4g07420
A. nidulans FGSC A4 Ortholog(s) : AN4449
View ortholog cluster : 20 genes among 20 Aspergillus-related species/strains
View alignment

Ortholog(s) in non-AspGD species

N. crassa (pcb-3) ; C. albicans (PUP3) ; S. pombe (pup3) ; S. cerevisiae (PUP3)

Chromosomal Location

GBrowse for A. niger CBS 513.88
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An04g01800

GO Annotations		View all An04g01800 GO evidence and references
Molecular Function
Computational		endopeptidase activator activity (IEA with S. cerevisiae: PUP3) threonine-type endopeptidase activity (IEA with EBI: IPR001353)
Biological Process
Computational		proteasomal ubiquitin-independent protein catabolic process (IEA with S. cerevisiae: PUP3) proteasome-mediated ubiquitin-dependent protein catabolic process (IEA with S. cerevisiae: PUP3)
Cellular Component
Computational		cytosol (IEA with S. pombe: pup3) nucleus (IEA with S. cerevisiae: PUP3, S. pombe: pup3) proteasome core complex, beta-subunit complex (IEA with S. cerevisiae: PUP3)

Sequence Information

An04_A_niger_CBS_513_88:469975 to 469155 | GBrowse
Note: this feature is encoded on the Crick strand.

Last Update

Coordinates: 2011-08-18 | Sequence: 2011-08-18

Subfeature Details

	Relative Coordinates			Chromosomal Coordinates			Most Recent Update
	Relative Coordinates			Chromosomal Coordinates			Coordinates	Sequence
5' UTR	-110	to	-1	470,085	to	469,976	2011-08-19	2011-08-19
CDS	1	to	3	469,975	to	469,973	2011-08-18	2011-08-18
Intron	4	to	68	469,972	to	469,908	2011-08-18	2011-08-18
CDS	69	to	87	469,907	to	469,889	2011-08-18	2011-08-18
Intron	88	to	143	469,888	to	469,833	2011-08-18	2011-08-18
CDS	144	to	598	469,832	to	469,378	2011-08-18	2011-08-18
Intron	599	to	677	469,377	to	469,299	2011-08-18	2011-08-18
CDS	678	to	821	469,298	to	469,155	2011-08-18	2011-08-18
3' UTR	822	to	1007	469,154	to	468,969	2011-08-19	2011-08-19

Retrieve Sequences
Sequence Analysis Tools
Maps & Displays

RNA-Seq Data

External Links

FungiDB | GenBank (1, 2) | TrEMBL

Primary AspGDID

ASPL0000249671

ADDITIONAL INFORMATION for An04g01800

Locus History

Gene/Sequence Resources

LOCUS SUMMARY NOTES for An04g01800

Information from the GenBank record :

db_xref = GI:134058458, GOA:A2QI02
inference = profile:COGS:COG0638, profile:PFAM:PF00227, similar to AA sequence:PIR:S29251
protein_id = CAL00667.1
EC_number = 3.4.25.1
note = unnamed protein product; Localization: PUP3 of S. cerevisiae is cytoplasmic and nuclear.; Remark: PUP3 of S. cerevisiae is also known as SCS32 and has a systematic name of YER094C.; Title: strong similarity to proteasome 20S subunit Pup3 - Saccharomyces cerevisiae

Last Updated: 2011-08-19

REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for An04g01800]

1)	AspGD (2011) Description lines for gene products, based on orthologs and predicted Gene Ontology (GO) annotations.

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To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2014). The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res 42 (1); D705-10; see How to cite AspGD.