A. niger An04g01870 Summary

Summary

Locus History

An04g01870 BASIC INFORMATION [ View References ]

Systematic Name, Reference Strain

An04g01870 (A. niger CBS 513.88)

Systematic Names Used in Other Strains

57073-mRNA (A. niger ATCC 1015)

Feature Type

ORF, Uncharacterized

Description

Ortholog(s) have endopeptidase activator activity and role in proteasomal ubiquitin-independent protein catabolic process, proteasome-mediated ubiquitin-dependent protein catabolic process (1)

Orthologous genes in Aspergillus species

A. oryzae RIB40 Ortholog(s) : AO090023000824
A. fumigatus Af293 Ortholog(s) : Afu4g07510/pre1
A. nidulans FGSC A4 Ortholog(s) : AN4457
View ortholog cluster : 19 genes among 19 Aspergillus-related species/strains
View alignment

Ortholog(s) in non-AspGD species

N. crassa (pcb-4) ; C. albicans (PRE1) ; S. pombe (pre1) ; S. cerevisiae (PRE1)

Chromosomal Location

GBrowse for A. niger CBS 513.88
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An04g01870

GO Annotations		View all An04g01870 GO evidence and references
Molecular Function
Computational		endopeptidase activator activity (IEA with S. cerevisiae: PRE1) threonine-type endopeptidase activity (IEA with EBI: IPR001353, EBI: IPR023333)
Biological Process
Computational		proteasomal ubiquitin-independent protein catabolic process (IEA with S. cerevisiae: PRE1) proteasome-mediated ubiquitin-dependent protein catabolic process (IEA with S. cerevisiae: PRE1)
Cellular Component
Computational		cytosol (IEA with S. pombe: pre1) endoplasmic reticulum membrane (IEA with S. cerevisiae: PRE1) nuclear envelope (IEA with S. pombe: pre1) proteasome core complex, beta-subunit complex (IEA with S. cerevisiae: PRE1)

Sequence Information

An04_A_niger_CBS_513_88:492677 to 493545 | GBrowse

Last Update

Coordinates: 2011-08-19 | Sequence: 2011-08-19

Subfeature Details

	Relative Coordinates			Chromosomal Coordinates			Most Recent Update
	Relative Coordinates			Chromosomal Coordinates			Coordinates	Sequence
5' UTR	-64	to	-1	492,613	to	492,676	2011-08-19	2011-08-19
CDS	1	to	2	492,677	to	492,678	2011-08-19	2011-08-19
Intron	3	to	59	492,679	to	492,735	2011-08-19	2011-08-19
CDS	60	to	217	492,736	to	492,893	2011-08-19	2011-08-19
Intron	218	to	292	492,894	to	492,968	2011-08-17	2011-08-17
CDS	293	to	542	492,969	to	493,218	2011-08-17	2011-08-17
Intron	543	to	605	493,219	to	493,281	2011-08-17	2011-08-17
CDS	606	to	729	493,282	to	493,405	2011-08-17	2011-08-17
Intron	730	to	791	493,406	to	493,467	2011-08-17	2011-08-17
CDS	792	to	869	493,468	to	493,545	2011-08-17	2011-08-17
3' UTR	870	to	1033	493,546	to	493,709	2011-08-19	2011-08-19

Retrieve Sequences
Sequence Analysis Tools
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RNA-Seq Data

External Links

FungiDB | GenBank (1, 2) | TrEMBL

Primary AspGDID

ASPL0000171679

ADDITIONAL INFORMATION for An04g01870

Locus History

Gene/Sequence Resources

LOCUS SUMMARY NOTES for An04g01870

Information from the GenBank record :

db_xref = GI:134058465, GOA:A2QI09
inference = profile:COGS:COG0638, profile:PFAM:PF00227, similar to AA sequence:PIR:S50470
protein_id = CAL00674.1
EC_number = 3.4.25.1
note = unnamed protein product; Protein sequence is in conflict with the conceptual translation; Localization: yeast proteasomes are mainly localized in the nuclear envelope-ER network.; Remark: putative sequencing error at position 13492 might have destroyed the start codon.; Title: strong similarity to proteasome 20S subunit Pre1 - Saccharomyces cerevisiae [putative sequencing error]; putative sequencing error

Last Updated: 2011-08-19

REFERENCES CITED ON THIS PAGE [View Complete Literature Guide for An04g01870]

1)	AspGD (2011) Description lines for gene products, based on orthologs and predicted Gene Ontology (GO) annotations.

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To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2014). The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res 42 (1); D705-10; see How to cite AspGD.