AspGD Curated Papers

Author(s)	Citation
Fiedler MR, Gensheimer T, Kubisch C, Meyer V	*Fiedler MR, et al.* (2017)** HisB as novel selection marker for gene targeting approaches in Aspergillus niger. BMC Microbiol 17(1):57
Wanka F, Arentshorst M, Cairns TC, Jorgensen T, Ram AF, Meyer V	*Wanka F, et al.* (2016)** Highly active promoters and native secretion signals for protein production during extremely low growth rates in Aspergillus niger. Microb Cell Fact 15(1):145
Park J, Hulsman M, Arentshorst M, Breeman M, Alazi E, Lagendijk EL, Rocha MC, Malavazi I, Nitsche BM, van den Hondel CA, Meyer V, Ram AF	*Park J, et al.* (2016)** Transcriptomic and molecular genetic analysis of the cell wall salvage response of Aspergillus niger to the absence of galactofuranose synthesis. Cell Microbiol 18(9):1268-84
Kwon MJ, Arentshorst M, Fiedler M, de Groen FL, Punt PJ, Meyer V, Ram AF	*Kwon MJ, et al.* (2014)** Molecular genetic analysis of vesicular transport in Aspergillus niger reveals partial conservation of the molecular mechanism of exocytosis in fungi. Microbiology 160(Pt 2):316-29
Nitsche BM, Burggraaf-van Welzen AM, Lamers G, Meyer V, Ram AF	*Nitsche BM, et al.* (2013)** Autophagy promotes survival in aging submerged cultures of the filamentous fungus Aspergillus niger. Appl Microbiol Biotechnol 97(18):8205-18
Kwon MJ, Nitsche BM, Arentshorst M, Jorgensen TR, Ram AF, Meyer V	*Kwon MJ, et al.* (2013)** The transcriptomic signature of RacA activation and inactivation provides new insights into the morphogenetic network of Aspergillus niger. PLoS One 8(7):e68946
Nitsche BM, Ram AF, Meyer V	*Nitsche BM, et al.* (2012)** The use of open source bioinformatics tools to dissect transcriptomic data. Methods Mol Biol 835:311-31
Nitsche BM, Jorgensen TR, Akeroyd M, Meyer V, Ram AF	*Nitsche BM, et al.* (2012)** The carbon starvation response of Aspergillus niger during submerged cultivation: insights from the transcriptome and secretome. BMC Genomics 13:380
Kwon MJ, Jorgensen TR, Nitsche BM, Arentshorst M, Park J, Ram AF, Meyer V	*Kwon MJ, et al.* (2012)** The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger. BMC Genomics 13:701
Nitsche BM, Crabtree J, Cerqueira GC, Meyer V, Ram AF, Wortman JR	*Nitsche BM, et al.* (2011)** New resources for functional analysis of omics data for the genus Aspergillus. BMC Genomics 12:486
Meyer V, Wanka F, van Gent J, Arentshorst M, Van Den Hondel CA, Ram AF	*Meyer V, et al.* (2011)** Fungal gene expression on demand: an inducible, tunable, and metabolism-independent expression system for Aspergillus niger. Appl Environ Microbiol 77(9):2975-83
Meyer V, Wu B, Ram AF	*Meyer V, et al.* (2011)** Aspergillus as a multi-purpose cell factory: current status and perspectives. Biotechnol Lett 33(3):469-76
Kwon MJ, Arentshorst M, Roos ED, van den Hondel CA, Meyer V, Ram AF	*Kwon MJ, et al.* (2011)** Functional characterization of Rho GTPases in Aspergillus niger uncovers conserved and diverged roles of Rho proteins within filamentous fungi. Mol Microbiol 79(5):1151-67
Binder U, Bencina M, Eigentler A, Meyer V, Marx F	*Binder U, et al.* (2011)** The Aspergillus giganteus antifungal protein AFPNN5353 activates the cell wall integrity pathway and perturbs calcium homeostasis. BMC Microbiol 11:209
Meyer V, Minkwitz S, Schutze T, Van Den Hondel CA, Ram AF	*Meyer V, et al.* (2010)** The Aspergillus niger RmsA protein: A node in a genetic network? Commun Integr Biol 3(2):195-7
Carvalho ND, Arentshorst M, Jin Kwon M, Meyer V, Ram AF	*Carvalho ND, et al.* (2010)** Expanding the ku70 toolbox for filamentous fungi: establishment of complementation vectors and recipient strains for advanced gene analyses. Appl Microbiol Biotechnol 87(4):1463-73
Binder U, Oberparleiter C, Meyer V, Marx F	*Binder U, et al.* (2010)** The antifungal protein PAF interferes with PKC/MPK and cAMP/PKA signalling of Aspergillus nidulans. Mol Microbiol 75(2):294-307
Meyer V, Arentshorst M, Flitter SJ, Nitsche BM, Kwon MJ, Reynaga-Pena CG, Bartnicki-Garcia S, Van Den Hondel CA, Ram AF	*Meyer V, et al.* (2009)** Reconstruction of signaling networks regulating fungal morphogenesis by transcriptomics. Eukaryot Cell 8(11):1677-91
Harris SD, Turner G, Meyer V, Espeso EA, Specht T, Takeshita N, Helmstedt K	*Harris SD, et al.* (2009)** Morphology and development in Aspergillus nidulans: a complex puzzle. Fungal Genet Biol 46 Suppl 1:S82-S92
Spielvogel A, Findon H, Arst HN, Araujo-Bazan L, Hernandez-Ortiz P, Stahl U, Meyer V, Espeso EA	*Spielvogel A, et al.* (2008)** Two zinc finger transcription factors, CrzA and SltA, are involved in cation homoeostasis and detoxification in Aspergillus nidulans. Biochem J 414(3):419-29
Meyer V, Arentshorst M, Van Den Hondel CA, Ram AF	*Meyer V, et al.* (2008)** The polarisome component SpaA localises to hyphal tips of Aspergillus niger and is important for polar growth. Fungal Genet Biol 45(2):152-64
Meyer V, Damveld RA, Arentshorst M, Stahl U, Van Den Hondel CA, Ram AF	*Meyer V, et al.* (2007)** Survival in the presence of antifungals: genome-wide expression profiling of Aspergillus niger in response to sublethal concentrations of caspofungin and fenpropimorph. J Biol Chem 282(45):32935-48
Meyer V, Arentshorst M, El-Ghezal A, Drews AC, Kooistra R, Van Den Hondel CA, Ram AF	*Meyer V, et al.* (2007)** Highly efficient gene targeting in the Aspergillus niger kusA mutant. J Biotechnol 128(4):770-5
Meyer V, Spielvogel A, Funk L, Tilburn J, Arst HN Jr, Stahl U	*Meyer V, et al.* (2005)** Alkaline pH-induced up-regulation of the afp gene encoding the antifungal protein (AFP) of Aspergillus giganteus is not mediated by the transcription factor PacC: possible involvement of calcineurin. Mol Genet Genomics 274(3):295-306
Theis T, Wedde M, Meyer V, Stahl U	*Theis T, et al.* (2003)** The antifungal protein from Aspergillus giganteus causes membrane permeabilization. Antimicrob Agents Chemother 47(2):588-93
Meyer V, Stahl U	Meyer V and Stahl U (2002) New insights in the regulation of the afp gene encoding the antifungal protein of Aspergillus giganteus. Curr Genet 42(1):36-42

Author(s)

Citation

Fiedler MR, Gensheimer T, Kubisch C, Meyer V

Fiedler MR, et al. (2017) HisB as novel selection marker for gene targeting approaches in Aspergillus niger. BMC Microbiol 17(1):57

Wanka F, Arentshorst M, Cairns TC, Jorgensen T, Ram AF, Meyer V

Wanka F, et al. (2016) Highly active promoters and native secretion signals for protein production during extremely low growth rates in Aspergillus niger. Microb Cell Fact 15(1):145

Park J, Hulsman M, Arentshorst M, Breeman M, Alazi E, Lagendijk EL, Rocha MC, Malavazi I, Nitsche BM, van den Hondel CA, Meyer V, Ram AF

Park J, et al. (2016) Transcriptomic and molecular genetic analysis of the cell wall salvage response of Aspergillus niger to the absence of galactofuranose synthesis. Cell Microbiol 18(9):1268-84

Kwon MJ, Arentshorst M, Fiedler M, de Groen FL, Punt PJ, Meyer V, Ram AF

Kwon MJ, et al. (2014) Molecular genetic analysis of vesicular transport in Aspergillus niger reveals partial conservation of the molecular mechanism of exocytosis in fungi. Microbiology 160(Pt 2):316-29

Nitsche BM, Burggraaf-van Welzen AM, Lamers G, Meyer V, Ram AF

Nitsche BM, et al. (2013) Autophagy promotes survival in aging submerged cultures of the filamentous fungus Aspergillus niger. Appl Microbiol Biotechnol 97(18):8205-18

Kwon MJ, Nitsche BM, Arentshorst M, Jorgensen TR, Ram AF, Meyer V

Kwon MJ, et al. (2013) The transcriptomic signature of RacA activation and inactivation provides new insights into the morphogenetic network of Aspergillus niger. PLoS One 8(7):e68946

Nitsche BM, Ram AF, Meyer V

Nitsche BM, et al. (2012) The use of open source bioinformatics tools to dissect transcriptomic data. Methods Mol Biol 835:311-31

Nitsche BM, Jorgensen TR, Akeroyd M, Meyer V, Ram AF

Nitsche BM, et al. (2012) The carbon starvation response of Aspergillus niger during submerged cultivation: insights from the transcriptome and secretome. BMC Genomics 13:380

Kwon MJ, Jorgensen TR, Nitsche BM, Arentshorst M, Park J, Ram AF, Meyer V

Kwon MJ, et al. (2012) The transcriptomic fingerprint of glucoamylase over-expression in Aspergillus niger. BMC Genomics 13:701

Nitsche BM, Crabtree J, Cerqueira GC, Meyer V, Ram AF, Wortman JR

Nitsche BM, et al. (2011) New resources for functional analysis of omics data for the genus Aspergillus. BMC Genomics 12:486

Meyer V, Wanka F, van Gent J, Arentshorst M, Van Den Hondel CA, Ram AF

Meyer V, et al. (2011) Fungal gene expression on demand: an inducible, tunable, and metabolism-independent expression system for Aspergillus niger. Appl Environ Microbiol 77(9):2975-83

Meyer V, Wu B, Ram AF

Meyer V, et al. (2011) Aspergillus as a multi-purpose cell factory: current status and perspectives. Biotechnol Lett 33(3):469-76

Kwon MJ, Arentshorst M, Roos ED, van den Hondel CA, Meyer V, Ram AF

Kwon MJ, et al. (2011) Functional characterization of Rho GTPases in Aspergillus niger uncovers conserved and diverged roles of Rho proteins within filamentous fungi. Mol Microbiol 79(5):1151-67

Binder U, Bencina M, Eigentler A, Meyer V, Marx F

Binder U, et al. (2011) The Aspergillus giganteus antifungal protein AFPNN5353 activates the cell wall integrity pathway and perturbs calcium homeostasis. BMC Microbiol 11:209

Meyer V, Minkwitz S, Schutze T, Van Den Hondel CA, Ram AF

Meyer V, et al. (2010) The Aspergillus niger RmsA protein: A node in a genetic network? Commun Integr Biol 3(2):195-7

Carvalho ND, Arentshorst M, Jin Kwon M, Meyer V, Ram AF

Carvalho ND, et al. (2010) Expanding the ku70 toolbox for filamentous fungi: establishment of complementation vectors and recipient strains for advanced gene analyses. Appl Microbiol Biotechnol 87(4):1463-73

Binder U, Oberparleiter C, Meyer V, Marx F

Binder U, et al. (2010) The antifungal protein PAF interferes with PKC/MPK and cAMP/PKA signalling of Aspergillus nidulans. Mol Microbiol 75(2):294-307

Meyer V, Arentshorst M, Flitter SJ, Nitsche BM, Kwon MJ, Reynaga-Pena CG, Bartnicki-Garcia S, Van Den Hondel CA, Ram AF

Meyer V, et al. (2009) Reconstruction of signaling networks regulating fungal morphogenesis by transcriptomics. Eukaryot Cell 8(11):1677-91

Harris SD, Turner G, Meyer V, Espeso EA, Specht T, Takeshita N, Helmstedt K

Harris SD, et al. (2009) Morphology and development in Aspergillus nidulans: a complex puzzle. Fungal Genet Biol 46 Suppl 1:S82-S92

Spielvogel A, Findon H, Arst HN, Araujo-Bazan L, Hernandez-Ortiz P, Stahl U, Meyer V, Espeso EA

Spielvogel A, et al. (2008) Two zinc finger transcription factors, CrzA and SltA, are involved in cation homoeostasis and detoxification in Aspergillus nidulans. Biochem J 414(3):419-29

Meyer V, Arentshorst M, Van Den Hondel CA, Ram AF

Meyer V, et al. (2008) The polarisome component SpaA localises to hyphal tips of Aspergillus niger and is important for polar growth. Fungal Genet Biol 45(2):152-64

Meyer V, Damveld RA, Arentshorst M, Stahl U, Van Den Hondel CA, Ram AF

Meyer V, et al. (2007) Survival in the presence of antifungals: genome-wide expression profiling of Aspergillus niger in response to sublethal concentrations of caspofungin and fenpropimorph. J Biol Chem 282(45):32935-48

Meyer V, Arentshorst M, El-Ghezal A, Drews AC, Kooistra R, Van Den Hondel CA, Ram AF

Meyer V, et al. (2007) Highly efficient gene targeting in the Aspergillus niger kusA mutant. J Biotechnol 128(4):770-5

Meyer V, Spielvogel A, Funk L, Tilburn J, Arst HN Jr, Stahl U

Meyer V, et al. (2005) Alkaline pH-induced up-regulation of the afp gene encoding the antifungal protein (AFP) of Aspergillus giganteus is not mediated by the transcription factor PacC: possible involvement of calcineurin. Mol Genet Genomics 274(3):295-306

Theis T, Wedde M, Meyer V, Stahl U

Theis T, et al. (2003) The antifungal protein from Aspergillus giganteus causes membrane permeabilization. Antimicrob Agents Chemother 47(2):588-93

Meyer V, Stahl U

Meyer V and Stahl U (2002) New insights in the regulation of the afp gene encoding the antifungal protein of Aspergillus giganteus. Curr Genet 42(1):36-42

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To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2014). The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res 42 (1); D705-10; see How to cite AspGD.