AspGD Curated Papers

Author(s)	Citation
Valsecchi I, Sarikaya Bayram O, Wong Sak Hoi J, Muszkieta L, Gibbons J, Prevost MC, Mallet A, Krijnse-Locker J, Ibrahim-Granet O, Mouyna I, Carr P, Bromley M, Aimanianda V, Yu YJ, Rokas A, Braus G, Saveanu C, Bayram O, Paul Latge J	*Valsecchi I, et al.* (2017)** MybA, a transcription factor involved in conidiation and conidial viability of the human pathogen Aspergillus fumigatus. Mol Microbiol
Lind AL, Smith TD, Saterlee T, Calvo AM, Rokas A	*Lind AL, et al.* (2016)** Regulation of Secondary Metabolism by the Velvet Complex Is Temperature-Responsive in Aspergillus. G3 (Bethesda) 6(12):4023-4033
Lind AL, Wisecaver JH, Smith TD, Feng X, Calvo AM, Rokas A	*Lind AL, et al.* (2015)** Examining the evolution of the regulatory circuit controlling secondary metabolism and development in the fungal genus Aspergillus. PLoS Genet 11(3):e1005096
Rokas A	Rokas A (2013) Aspergillus. Curr Biol 23(5):R187-8
Muszkieta L, Beauvais A, Pahtz V, Gibbons JG, Anton Leberre V, Beau R, Shibuya K, Rokas A, Francois JM, Kniemeyer O, Brakhage AA, Latge JP	*Muszkieta L, et al.* (2013)** Investigation of Aspergillus fumigatus biofilm formation by various "omics" approaches. Front Microbiol 4:13
Gibbons JG, Rokas A	Gibbons JG and Rokas A (2013) The function and evolution of the Aspergillus genome. Trends Microbiol 21(1):14-22
Dhingra S, Lind AL, Lin HC, Tang Y, Rokas A, Calvo AM	*Dhingra S, et al.* (2013)** The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus. PLoS One 8(10):e77147
Rokas A, Gibbons JG, Zhou X, Beauvais A, Latge JP	*Rokas A, et al.* (2012)** The diverse applications of RNA-seq for functional genomic studies in Aspergillus fumigatus. Ann N Y Acad Sci 1273:25-34
Klaassen CH, Gibbons JG, Fedorova ND, Meis JF, Rokas A	*Klaassen CH, et al.* (2012)** Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus. Mol Ecol 21(1):57-70
Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, Klich MA, Tabb DL, McDonald WH, Rokas A	*Gibbons JG, et al.* (2012)** The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Curr Biol 22(15):1403-9
Gibbons JG, Beauvais A, Beau R, McGary KL, Latge JP, Rokas A	*Gibbons JG, et al.* (2012)** Global transcriptome changes underlying colony growth in the opportunistic human pathogen Aspergillus fumigatus. Eukaryot Cell 11(1):68-78
Elmore MH, Gibbons JG, Rokas A	*Elmore MH, et al.* (2012)** Assessing the genome-wide effect of promoter region tandem repeat natural variation on gene expression. G3 (Bethesda) 2(12):1643-9
Slot JC, Rokas A	Slot JC and Rokas A (2011) Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Curr Biol 21(2):134-9
Rokas A, Payne G, Fedorova ND, Baker SE, Machida M, Yu J, Georgianna DR, Dean RA, Bhatnagar D, Cleveland TE, Wortman JR, Maiti R, Joardar V, Amedeo P, Denning DW, Nierman WC	*Rokas A, et al.* (2007)** What can comparative genomics tell us about species concepts in the genus Aspergillus? Stud Mycol 59:11-7

Author(s)

Citation

Valsecchi I, Sarikaya Bayram O, Wong Sak Hoi J, Muszkieta L, Gibbons J, Prevost MC, Mallet A, Krijnse-Locker J, Ibrahim-Granet O, Mouyna I, Carr P, Bromley M, Aimanianda V, Yu YJ, Rokas A, Braus G, Saveanu C, Bayram O, Paul Latge J

Valsecchi I, et al. (2017) MybA, a transcription factor involved in conidiation and conidial viability of the human pathogen Aspergillus fumigatus. Mol Microbiol

Lind AL, Smith TD, Saterlee T, Calvo AM, Rokas A

Lind AL, et al. (2016) Regulation of Secondary Metabolism by the Velvet Complex Is Temperature-Responsive in Aspergillus. G3 (Bethesda) 6(12):4023-4033

Lind AL, Wisecaver JH, Smith TD, Feng X, Calvo AM, Rokas A

Lind AL, et al. (2015) Examining the evolution of the regulatory circuit controlling secondary metabolism and development in the fungal genus Aspergillus. PLoS Genet 11(3):e1005096

Rokas A

Rokas A (2013) Aspergillus. Curr Biol 23(5):R187-8

Muszkieta L, Beauvais A, Pahtz V, Gibbons JG, Anton Leberre V, Beau R, Shibuya K, Rokas A, Francois JM, Kniemeyer O, Brakhage AA, Latge JP

Muszkieta L, et al. (2013) Investigation of Aspergillus fumigatus biofilm formation by various "omics" approaches. Front Microbiol 4:13

Gibbons JG, Rokas A

Gibbons JG and Rokas A (2013) The function and evolution of the Aspergillus genome. Trends Microbiol 21(1):14-22

Dhingra S, Lind AL, Lin HC, Tang Y, Rokas A, Calvo AM

Dhingra S, et al. (2013) The fumagillin gene cluster, an example of hundreds of genes under veA control in Aspergillus fumigatus. PLoS One 8(10):e77147

Rokas A, Gibbons JG, Zhou X, Beauvais A, Latge JP

Rokas A, et al. (2012) The diverse applications of RNA-seq for functional genomic studies in Aspergillus fumigatus. Ann N Y Acad Sci 1273:25-34

Klaassen CH, Gibbons JG, Fedorova ND, Meis JF, Rokas A

Klaassen CH, et al. (2012) Evidence for genetic differentiation and variable recombination rates among Dutch populations of the opportunistic human pathogen Aspergillus fumigatus. Mol Ecol 21(1):57-70

Gibbons JG, Salichos L, Slot JC, Rinker DC, McGary KL, King JG, Klich MA, Tabb DL, McDonald WH, Rokas A

Gibbons JG, et al. (2012) The evolutionary imprint of domestication on genome variation and function of the filamentous fungus Aspergillus oryzae. Curr Biol 22(15):1403-9

Gibbons JG, Beauvais A, Beau R, McGary KL, Latge JP, Rokas A

Gibbons JG, et al. (2012) Global transcriptome changes underlying colony growth in the opportunistic human pathogen Aspergillus fumigatus. Eukaryot Cell 11(1):68-78

Elmore MH, Gibbons JG, Rokas A

Elmore MH, et al. (2012) Assessing the genome-wide effect of promoter region tandem repeat natural variation on gene expression. G3 (Bethesda) 2(12):1643-9

Slot JC, Rokas A

Slot JC and Rokas A (2011) Horizontal transfer of a large and highly toxic secondary metabolic gene cluster between fungi. Curr Biol 21(2):134-9

Rokas A, Payne G, Fedorova ND, Baker SE, Machida M, Yu J, Georgianna DR, Dean RA, Bhatnagar D, Cleveland TE, Wortman JR, Maiti R, Joardar V, Amedeo P, Denning DW, Nierman WC

Rokas A, et al. (2007) What can comparative genomics tell us about species concepts in the genus Aspergillus? Stud Mycol 59:11-7

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To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2014). The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res 42 (1); D705-10; see How to cite AspGD.