AspGD Curated Papers

Author(s)	Citation
Marcos AT, Ramos MS, Marcos JF, Carmona L, Strauss J, Canovas D	*Marcos AT, et al.* (2016)** Nitric oxide synthesis by nitrate reductase is regulated during development in Aspergillus. Mol Microbiol 99(1):15-33
Gacek-Matthews A, Berger H, Sasaki T, Wittstein K, Gruber C, Lewis ZA, Strauss J	*Gacek-Matthews A, et al.* (2016)** KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans. PLoS Genet 12(8):e1006222
Gallmetzer A, Silvestrini L, Schinko T, Gesslbauer B, Hortschansky P, Dattenbock C, Muro-Pastor MI, Kungl A, Brakhage AA, Scazzocchio C, Strauss J	*Gallmetzer A, et al.* (2015)** Reversible Oxidation of a Conserved Methionine in the Nuclear Export Sequence Determines Subcellular Distribution and Activity of the Fungal Nitrate Regulator NirA. PLoS Genet 11(7):e1005297
Gacek-Matthews A, Noble LM, Gruber C, Berger H, Sulyok M, Marcos AT, Strauss J, Andrianopoulos A	*Gacek-Matthews A, et al.* (2015)** KdmA, a histone H3 demethylase with bipartite function, differentially regulates primary and secondary metabolism in Aspergillus nidulans. Mol Microbiol 96(4):839-60
Canovas D, Marcos AT, Gacek A, Ramos MS, Gutierrez G, Reyes-Dominguez Y, Strauss J	*Canovas D, et al.* (2014)** The histone acetyltransferase GcnE (GCN5) plays a central role in the regulation of Aspergillus asexual development. Genetics 197(4):1175-89
Zutz C, Gacek A, Sulyok M, Wagner M, Strauss J, Rychli K	*Zutz C, et al.* (2013)** Small chemical chromatin effectors alter secondary metabolite production in Aspergillus clavatus. Toxins (Basel) 5(10):1723-41
Schinko T, Gallmetzer A, Amillis S, Strauss J	*Schinko T, et al.* (2013)** Pseudo-constitutivity of nitrate-responsive genes in nitrate reductase mutants. Fungal Genet Biol 54:34-41
Soukup AA, Chiang YM, Bok JW, Reyes-Dominguez Y, Oakley BR, Wang CC, Strauss J, Keller NP	*Soukup AA, et al.* (2012)** Overexpression of the Aspergillus nidulans histone 4 acetyltransferase EsaA increases activation of secondary metabolite production. Mol Microbiol 86(2):314-30
Nutzmann HW, Reyes-Dominguez Y, Scherlach K, Schroeckh V, Horn F, Gacek A, Schumann J, Hertweck C, Strauss J, Brakhage AA	*Nutzmann HW, et al.* (2011)** Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation. Proc Natl Acad Sci U S A 108(34):14282-7
Schinko T, Berger H, Lee W, Gallmetzer A, Pirker K, Pachlinger R, Buchner I, Reichenauer T, Guldener U, Strauss J	*Schinko T, et al.* (2010)** Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism. Mol Microbiol 78(3):720-38
Reyes-Dominguez Y, Bok JW, Berger H, Shwab EK, Basheer A, Gallmetzer A, Scazzocchio C, Keller N, Strauss J	*Reyes-Dominguez Y, et al.* (2010)** Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans. Mol Microbiol 76(6):1376-86
Morozov IY, Jones MG, Spiller DG, Rigden DJ, Dattenbock C, Novotny R, Strauss J, Caddick MX	*Morozov IY, et al.* (2010)** Distinct roles for Caf1, Ccr4, Edc3 and CutA in the co-ordination of transcript deadenylation, decapping and P-body formation in Aspergillus nidulans. Mol Microbiol 76(2):503-16
Keiblinger KM, Hall EK, Wanek W, Szukics U, Hammerle I, Ellersdorfer G, Bock S, Strauss J, Sterflinger K, Richter A, Zechmeister-Boltenstern S	*Keiblinger KM, et al.* (2010)** The effect of resource quantity and resource stoichiometry on microbial carbon-use-efficiency. FEMS Microbiol Ecol 73(3):430-40
Soriani FM, Kress MR, Fagundes de Gouvea P, Malavazi I, Savoldi M, Gallmetzer A, Strauss J, Goldman MH, Goldman GH	*Soriani FM, et al.* (2009)** Functional characterization of the Aspergillus nidulans methionine sulfoxide reductases (msrA and msrB). Fungal Genet Biol 46(5):410-7
Bok JW, Chiang YM, Szewczyk E, Reyes-Dominguez Y, Davidson AD, Sanchez JF, Lo HC, Watanabe K, Strauss J, Oakley BR, Wang CC, Keller NP	*Bok JW, et al.* (2009)** Chromatin-level regulation of biosynthetic gene clusters. Nat Chem Biol 5(7):462-4
Basheer A, Berger H, Reyes-Dominguez Y, Gorfer M, Strauss J	*Basheer A, et al.* (2009)** A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions. Nucleic Acids Res 37(6):e42
Reyes-Dominguez Y, Narendja F, Berger H, Gallmetzer A, Fernandez-Martin R, Garcia I, Scazzocchio C, Strauss J	*Reyes-Dominguez Y, et al.* (2008)** Nucleosome positioning and histone H3 acetylation are independent processes in the Aspergillus nidulans prnD-prnB bidirectional promoter. Eukaryot Cell 7(4):656-63
Berger H, Basheer A, Bock S, Reyes-Dominguez Y, Dalik T, Altmann F, Strauss J	*Berger H, et al.* (2008)** Dissecting individual steps of nitrogen transcription factor cooperation in the Aspergillus nidulans nitrate cluster. Mol Microbiol 69(6):1385-98
Bernreiter A, Ramon A, Fernandez-Martinez J, Berger H, Araujo-Bazan L, Espeso EA, Pachlinger R, Gallmetzer A, Anderl I, Scazzocchio C, Strauss J	*Bernreiter A, et al.* (2007)** Nuclear export of the transcription factor NirA is a regulatory checkpoint for nitrate induction in Aspergillus nidulans. Mol Cell Biol 27(3):791-802
Caddick MX, Jones MG, van Tonder JM, Le Cordier H, Narendja F, Strauss J, Morozov IY	*Caddick MX, et al.* (2006)** Opposing signals differentially regulate transcript stability in Aspergillus nidulans. Mol Microbiol 62(2):509-19
Berger H, Pachlinger R, Morozov I, Goller S, Narendja F, Caddick M, Strauss J	*Berger H, et al.* (2006)** The GATA factor AreA regulates localization and in vivo binding site occupancy of the nitrate activator NirA. Mol Microbiol 59(2):433-46
Pachlinger R, Mitterbauer R, Adam G, Strauss J	*Pachlinger R, et al.* (2005)** Metabolically independent and accurately adjustable Aspergillus sp. expression system. Appl Environ Microbiol 71(2):672-8
Muro-Pastor MI, Strauss J, Ramon A, Scazzocchio C	*Muro-Pastor MI, et al.* (2004)** A paradoxical mutant GATA factor. Eukaryot Cell 3(2):393-405
Narendja F, Goller SP, Wolschek M, Strauss J	*Narendja F, et al.* (2002)** Nitrate and the GATA factor AreA are necessary for in vivo binding of NirA, the pathway-specific transcriptional activator of Aspergillus nidulans. Mol Microbiol 44(2):573-83
Hicks J, Lockington RA, Strauss J, Dieringer D, Kubicek CP, Kelly J, Keller N	*Hicks J, et al.* (2001)** RcoA has pleiotropic effects on Aspergillus nidulans cellular development. Mol Microbiol 39(6):1482-93
Abdallah BM, Simoes T, Fernandes AR, Strauss J, Seiboth B, Sa-Correia I, Kubicek CP	*Abdallah BM, et al.* (2000)** Glucose does not activate the plasma-membrane-bound H+-ATPase but affects pmaA transcript abundance in Aspergillus nidulans. Arch Microbiol 174(5):340-5
Strauss J, Horvath HK, Abdallah BM, Kindermann J, Mach RL, Kubicek CP	*Strauss J, et al.* (1999)** The function of CreA, the carbon catabolite repressor of Aspergillus nidulans, is regulated at the transcriptional and post-transcriptional level. Mol Microbiol 32(1):169-78
Muro-Pastor MI, Gonzalez R, Strauss J, Narendja F, Scazzocchio C	*Muro-Pastor MI, et al.* (1999)** The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter. EMBO J 18(6):1584-97
Strauss J, Muro-Pastor MI, Scazzocchio C	*Strauss J, et al.* (1998)** The regulator of nitrate assimilation in ascomycetes is a dimer which binds a nonrepeated, asymmetrical sequence. Mol Cell Biol 18(3):1339-48
Strauss J, Mach RL, Zeilinger S, Hartler G, Stoffler G, Wolschek M, Kubicek CP	*Strauss J, et al.* (1995)** Cre1, the carbon catabolite repressor protein from Trichoderma reesei. FEBS Lett 376(1-2):103-7
Punt PJ, Strauss J, Smit R, Kinghorn JR, van den Hondel CA, Scazzocchio C	*Punt PJ, et al.* (1995)** The intergenic region between the divergently transcribed niiA and niaD genes of Aspergillus nidulans contains multiple NirA binding sites which act bidirectionally. Mol Cell Biol 15(10):5688-99
Burger G, Strauss J, Scazzocchio C, Lang BF	*Burger G, et al.* (1991)** nirA, the pathway-specific regulatory gene of nitrate assimilation in Aspergillus nidulans, encodes a putative GAL4-type zinc finger protein and contains four introns in highly conserved regions. Mol Cell Biol 11(11):5746-55

Author(s)

Citation

Marcos AT, Ramos MS, Marcos JF, Carmona L, Strauss J, Canovas D

Marcos AT, et al. (2016) Nitric oxide synthesis by nitrate reductase is regulated during development in Aspergillus. Mol Microbiol 99(1):15-33

Gacek-Matthews A, Berger H, Sasaki T, Wittstein K, Gruber C, Lewis ZA, Strauss J

Gacek-Matthews A, et al. (2016) KdmB, a Jumonji Histone H3 Demethylase, Regulates Genome-Wide H3K4 Trimethylation and Is Required for Normal Induction of Secondary Metabolism in Aspergillus nidulans. PLoS Genet 12(8):e1006222

Gallmetzer A, Silvestrini L, Schinko T, Gesslbauer B, Hortschansky P, Dattenbock C, Muro-Pastor MI, Kungl A, Brakhage AA, Scazzocchio C, Strauss J

Gallmetzer A, et al. (2015) Reversible Oxidation of a Conserved Methionine in the Nuclear Export Sequence Determines Subcellular Distribution and Activity of the Fungal Nitrate Regulator NirA. PLoS Genet 11(7):e1005297

Gacek-Matthews A, Noble LM, Gruber C, Berger H, Sulyok M, Marcos AT, Strauss J, Andrianopoulos A

Gacek-Matthews A, et al. (2015) KdmA, a histone H3 demethylase with bipartite function, differentially regulates primary and secondary metabolism in Aspergillus nidulans. Mol Microbiol 96(4):839-60

Canovas D, Marcos AT, Gacek A, Ramos MS, Gutierrez G, Reyes-Dominguez Y, Strauss J

Canovas D, et al. (2014) The histone acetyltransferase GcnE (GCN5) plays a central role in the regulation of Aspergillus asexual development. Genetics 197(4):1175-89

Zutz C, Gacek A, Sulyok M, Wagner M, Strauss J, Rychli K

Zutz C, et al. (2013) Small chemical chromatin effectors alter secondary metabolite production in Aspergillus clavatus. Toxins (Basel) 5(10):1723-41

Schinko T, Gallmetzer A, Amillis S, Strauss J

Schinko T, et al. (2013) Pseudo-constitutivity of nitrate-responsive genes in nitrate reductase mutants. Fungal Genet Biol 54:34-41

Soukup AA, Chiang YM, Bok JW, Reyes-Dominguez Y, Oakley BR, Wang CC, Strauss J, Keller NP

Soukup AA, et al. (2012) Overexpression of the Aspergillus nidulans histone 4 acetyltransferase EsaA increases activation of secondary metabolite production. Mol Microbiol 86(2):314-30

Nutzmann HW, Reyes-Dominguez Y, Scherlach K, Schroeckh V, Horn F, Gacek A, Schumann J, Hertweck C, Strauss J, Brakhage AA

Nutzmann HW, et al. (2011) Bacteria-induced natural product formation in the fungus Aspergillus nidulans requires Saga/Ada-mediated histone acetylation. Proc Natl Acad Sci U S A 108(34):14282-7

Schinko T, Berger H, Lee W, Gallmetzer A, Pirker K, Pachlinger R, Buchner I, Reichenauer T, Guldener U, Strauss J

Schinko T, et al. (2010) Transcriptome analysis of nitrate assimilation in Aspergillus nidulans reveals connections to nitric oxide metabolism. Mol Microbiol 78(3):720-38

Reyes-Dominguez Y, Bok JW, Berger H, Shwab EK, Basheer A, Gallmetzer A, Scazzocchio C, Keller N, Strauss J

Reyes-Dominguez Y, et al. (2010) Heterochromatic marks are associated with the repression of secondary metabolism clusters in Aspergillus nidulans. Mol Microbiol 76(6):1376-86

Morozov IY, Jones MG, Spiller DG, Rigden DJ, Dattenbock C, Novotny R, Strauss J, Caddick MX

Morozov IY, et al. (2010) Distinct roles for Caf1, Ccr4, Edc3 and CutA in the co-ordination of transcript deadenylation, decapping and P-body formation in Aspergillus nidulans. Mol Microbiol 76(2):503-16

Keiblinger KM, Hall EK, Wanek W, Szukics U, Hammerle I, Ellersdorfer G, Bock S, Strauss J, Sterflinger K, Richter A, Zechmeister-Boltenstern S

Keiblinger KM, et al. (2010) The effect of resource quantity and resource stoichiometry on microbial carbon-use-efficiency. FEMS Microbiol Ecol 73(3):430-40

Soriani FM, Kress MR, Fagundes de Gouvea P, Malavazi I, Savoldi M, Gallmetzer A, Strauss J, Goldman MH, Goldman GH

Soriani FM, et al. (2009) Functional characterization of the Aspergillus nidulans methionine sulfoxide reductases (msrA and msrB). Fungal Genet Biol 46(5):410-7

Bok JW, Chiang YM, Szewczyk E, Reyes-Dominguez Y, Davidson AD, Sanchez JF, Lo HC, Watanabe K, Strauss J, Oakley BR, Wang CC, Keller NP

Bok JW, et al. (2009) Chromatin-level regulation of biosynthetic gene clusters. Nat Chem Biol 5(7):462-4

Basheer A, Berger H, Reyes-Dominguez Y, Gorfer M, Strauss J

Basheer A, et al. (2009) A library-based method to rapidly analyse chromatin accessibility at multiple genomic regions. Nucleic Acids Res 37(6):e42

Reyes-Dominguez Y, Narendja F, Berger H, Gallmetzer A, Fernandez-Martin R, Garcia I, Scazzocchio C, Strauss J

Reyes-Dominguez Y, et al. (2008) Nucleosome positioning and histone H3 acetylation are independent processes in the Aspergillus nidulans prnD-prnB bidirectional promoter. Eukaryot Cell 7(4):656-63

Berger H, Basheer A, Bock S, Reyes-Dominguez Y, Dalik T, Altmann F, Strauss J

Berger H, et al. (2008) Dissecting individual steps of nitrogen transcription factor cooperation in the Aspergillus nidulans nitrate cluster. Mol Microbiol 69(6):1385-98

Bernreiter A, Ramon A, Fernandez-Martinez J, Berger H, Araujo-Bazan L, Espeso EA, Pachlinger R, Gallmetzer A, Anderl I, Scazzocchio C, Strauss J

Bernreiter A, et al. (2007) Nuclear export of the transcription factor NirA is a regulatory checkpoint for nitrate induction in Aspergillus nidulans. Mol Cell Biol 27(3):791-802

Caddick MX, Jones MG, van Tonder JM, Le Cordier H, Narendja F, Strauss J, Morozov IY

Caddick MX, et al. (2006) Opposing signals differentially regulate transcript stability in Aspergillus nidulans. Mol Microbiol 62(2):509-19

Berger H, Pachlinger R, Morozov I, Goller S, Narendja F, Caddick M, Strauss J

Berger H, et al. (2006) The GATA factor AreA regulates localization and in vivo binding site occupancy of the nitrate activator NirA. Mol Microbiol 59(2):433-46

Pachlinger R, Mitterbauer R, Adam G, Strauss J

Pachlinger R, et al. (2005) Metabolically independent and accurately adjustable Aspergillus sp. expression system. Appl Environ Microbiol 71(2):672-8

Muro-Pastor MI, Strauss J, Ramon A, Scazzocchio C

Muro-Pastor MI, et al. (2004) A paradoxical mutant GATA factor. Eukaryot Cell 3(2):393-405

Narendja F, Goller SP, Wolschek M, Strauss J

Narendja F, et al. (2002) Nitrate and the GATA factor AreA are necessary for in vivo binding of NirA, the pathway-specific transcriptional activator of Aspergillus nidulans. Mol Microbiol 44(2):573-83

Hicks J, Lockington RA, Strauss J, Dieringer D, Kubicek CP, Kelly J, Keller N

Hicks J, et al. (2001) RcoA has pleiotropic effects on Aspergillus nidulans cellular development. Mol Microbiol 39(6):1482-93

Abdallah BM, Simoes T, Fernandes AR, Strauss J, Seiboth B, Sa-Correia I, Kubicek CP

Abdallah BM, et al. (2000) Glucose does not activate the plasma-membrane-bound H+-ATPase but affects pmaA transcript abundance in Aspergillus nidulans. Arch Microbiol 174(5):340-5

Strauss J, Horvath HK, Abdallah BM, Kindermann J, Mach RL, Kubicek CP

Strauss J, et al. (1999) The function of CreA, the carbon catabolite repressor of Aspergillus nidulans, is regulated at the transcriptional and post-transcriptional level. Mol Microbiol 32(1):169-78

Muro-Pastor MI, Gonzalez R, Strauss J, Narendja F, Scazzocchio C

Muro-Pastor MI, et al. (1999) The GATA factor AreA is essential for chromatin remodelling in a eukaryotic bidirectional promoter. EMBO J 18(6):1584-97

Strauss J, Muro-Pastor MI, Scazzocchio C

Strauss J, et al. (1998) The regulator of nitrate assimilation in ascomycetes is a dimer which binds a nonrepeated, asymmetrical sequence. Mol Cell Biol 18(3):1339-48

Strauss J, Mach RL, Zeilinger S, Hartler G, Stoffler G, Wolschek M, Kubicek CP

Strauss J, et al. (1995) Cre1, the carbon catabolite repressor protein from Trichoderma reesei. FEBS Lett 376(1-2):103-7

Punt PJ, Strauss J, Smit R, Kinghorn JR, van den Hondel CA, Scazzocchio C

Punt PJ, et al. (1995) The intergenic region between the divergently transcribed niiA and niaD genes of Aspergillus nidulans contains multiple NirA binding sites which act bidirectionally. Mol Cell Biol 15(10):5688-99

Burger G, Strauss J, Scazzocchio C, Lang BF

Burger G, et al. (1991) nirA, the pathway-specific regulatory gene of nitrate assimilation in Aspergillus nidulans, encodes a putative GAL4-type zinc finger protein and contains four introns in highly conserved regions. Mol Cell Biol 11(11):5746-55

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To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2014). The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res 42 (1); D705-10; see How to cite AspGD.