AspGD Curated Papers

Author(s)	Citation
Dilokpimol A, Makela MR, Mansouri S, Belova O, Waterstraat M, Bunzel M, de Vries RP, Hilden KS	*Dilokpimol A, et al.* (2017)** Expanding the feruloyl esterase gene family of Aspergillus niger by characterization of a feruloyl esterase, FaeC. N Biotechnol 37(Pt B):200-209
Benoit-Gelber I, Gruntjes T, Vinck A, van Veluw JG, Wosten HA, Boeren S, Vervoort JJ, de Vries RP	*Benoit-Gelber I, et al.* (2017)** Mixed colonies of Aspergillus niger and Aspergillus oryzae cooperatively degrading wheat bran. Fungal Genet Biol 102:31-37
Alazi E, Khosravi C, Homan TG, du Pre S, Arentshorst M, Di Falco M, Pham TTM, Peng M, Aguilar-Pontes MV, Visser J, Tsang A, de Vries RP, Ram AFJ	*Alazi E, et al.* (2017)** The pathway intermediate 2-keto-3-deoxy-L-galactonate mediates the induction of genes involved in D-galacturonic acid utilization in Aspergillus niger. FEBS Lett 591(10):1408-1418
Patyshakuliyeva A, Arentshorst M, Allijn IE, Ram AF, de Vries RP, Gelber IB	*Patyshakuliyeva A, et al.* (2016)** Improving cellulase production by Aspergillus niger using adaptive evolution. Biotechnol Lett 38(6):969-74
Jiang Y, Duarte AV, van den Brink J, Wiebenga A, Zou G, Wang C, de Vries RP, Zhou Z, Benoit I	*Jiang Y, et al.* (2016)** Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger. Biotechnol Lett 38(1):65-70
Wang F, Krijgsheld P, Hulsman M, de Bekker C, Muller WH, Reinders M, de Vries RP, Wosten HA	*Wang F, et al.* (2015)** FluG affects secretion in colonies of Aspergillus niger. Antonie Van Leeuwenhoek 107(1):225-40
Niu J, Homan TG, Arentshorst M, de Vries RP, Visser J, Ram AF	*Niu J, et al.* (2015)** The interaction of induction and repression mechanisms in the regulation of galacturonic acid-induced genes in Aspergillus niger. Fungal Genet Biol 82:32-42
Kowalczyk JE, Gruben BS, Battaglia E, Wiebenga A, Majoor E, de Vries RP	*Kowalczyk JE, et al.* (2015)** Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression. PLoS One 10(11):e0143200
van den Brink J, Maitan-Alfenas GP, Zou G, Wang C, Zhou Z, Guimaraes VM, de Vries RP	*van den Brink J, et al.* (2014)** Synergistic effect of Aspergillus niger and Trichoderma reesei enzyme sets on the saccharification of wheat straw and sugarcane bagasse. Biotechnol J 9(10):1329-38
Klaubauf S, Narang HM, Post H, Zhou M, Brunner K, Mach-Aigner AR, Mach RL, Heck AJ, Maarten Altelaar AF, de Vries RP	*Klaubauf S, et al.* (2014)** Similar is not the same: differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi. Fungal Genet Biol 72:73-81
Culleton H, McKie VA, de Vries RP	*Culleton H, et al.* (2014)** Overexpression, purification and characterisation of homologous alpha-L-arabinofuranosidase and endo-1,4-beta-D-glucanase in Aspergillus vadensis. J Ind Microbiol Biotechnol 41(11):1697-708
Battaglia E, Zhou M, de Vries RP	*Battaglia E, et al.* (2014)** The transcriptional activators AraR and XlnR from Aspergillus niger regulate expression of pentose catabolic and pentose phosphate pathway genes. Res Microbiol 165(7):531-40
de Souza WR, Maitan-Alfenas GP, de Gouvea PF, Brown NA, Savoldi M, Battaglia E, Goldman MH, de Vries RP, Goldman GH	*de Souza WR, et al.* (2013)** The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in D-xylose, L-arabinose and steam-exploded sugarcane bagasse. Fungal Genet Biol 60:29-45
Reddy SK, Rosengren A, Klaubauf S, Kulkarni T, Karlsson EN, de Vries RP, Stalbrand H	*Reddy SK, et al.* (2013)** Phylogenetic analysis and substrate specificity of GH2 beta-mannosidases from Aspergillus species. FEBS Lett 587(21):3444-9
Nikolaev I, Farmer Hansen S, Madrid S, de Vries RP	*Nikolaev I, et al.* (2013)** Disruption of the L-arabitol dehydrogenase encoding gene in Aspergillus tubingensis results in increased xylanase production. Biotechnol J 8(8):905-11
Culleton H, McKie V, de Vries RP	*Culleton H, et al.* (2013)** Physiological and molecular aspects of degradation of plant polysaccharides by fungi: what have we learned from Aspergillus? Biotechnol J 8(8):884-94
Vankuyk PA, Benen JA, Wosten HA, Visser J, de Vries RP	*vanKuyk PA, et al.* (2012)** A broader role for AmyR in Aspergillus niger: regulation of the utilisation of D-glucose or D-galactose containing oligo- and polysaccharides. Appl Microbiol Biotechnol 93(1):285-93
Gruben BS, Zhou M, de Vries RP	*Gruben BS, et al.* (2012)** GalX regulates the D-galactose oxido-reductive pathway in Aspergillus niger. FEBS Lett 586(22):3980-5
Fekete E, de Vries RP, Seiboth B, vanKuyk PA, Sandor E, Fekete E, Metz B, Kubicek CP, Karaffa L	*Fekete E, et al.* (2012)** D-Galactose uptake is nonfunctional in the conidiospores of Aspergillus niger. FEMS Microbiol Lett 329(2):198-203
Andersen MR, Giese M, de Vries RP, Nielsen J	*Andersen MR, et al.* (2012)** Mapping the polysaccharide degradation potential of Aspergillus niger. BMC Genomics 13:313
de Souza WR, De Gouvea PF, Savoldi M, Malavazi I, de Souza Bernardes LA, Goldman MH, de Vries RP, de Castro Oliveira JV, Goldman GH	*de Souza WR, et al.* (2011)** Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse. Biotechnol Biofuels 4:40
Vinck A, de Bekker C, Ossin A, Ohm RA, de Vries RP, Wosten HA	*Vinck A, et al.* (2011)** Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colonies. Environ Microbiol 13(1):216-25
Meijer M, Houbraken JA, Dalhuijsen S, Samson RA, de Vries RP	*Meijer M, et al.* (2011)** Growth and hydrolase profiles can be used as characteristics to distinguish Aspergillus niger and other black aspergilli. Stud Mycol 69(1):19-30
Christensen U, Gruben BS, Madrid S, Mulder H, Nikolaev I, de Vries RP	*Christensen U, et al.* (2011)** Unique regulatory mechanism for D-galactose utilization in Aspergillus nidulans. Appl Environ Microbiol 77(19):7084-7
Battaglia E, Hansen SF, Leendertse A, Madrid S, Mulder H, Nikolaev I, de Vries RP	*Battaglia E, et al.* (2011)** Regulation of pentose utilisation by AraR, but not XlnR, differs in Aspergillus nidulans and Aspergillus niger. Appl Microbiol Biotechnol 91(2):387-97
Battaglia E, Visser L, Nijssen A, van Veluw GJ, Wosten HA, de Vries RP	*Battaglia E, et al.* (2011)** Analysis of regulation of pentose utilisation in Aspergillus niger reveals evolutionary adaptations in Eurotiales. Stud Mycol 69(1):31-8
Aguilar-Osorio G, Vankuyk PA, Seiboth B, Blom D, Solomon PS, Vinck A, Kindt F, Wosten HA, de Vries RP	*Aguilar-Osorio G, et al.* (2010)** Spatial and developmental differentiation of mannitol dehydrogenase and mannitol-1-phosphate dehydrogenase in Aspergillus niger. Eukaryot Cell 9(9):1398-402
Wadman MW, de Vries RP, Kalkhove SI, Veldink GA, Vliegenthart JF	*Wadman MW, et al.* (2009)** Characterization of oxylipins and dioxygenase genes in the asexual fungus Aspergillus niger. BMC Microbiol 9:59
Rutten L, Ribot C, Trejo-Aguilar B, Wosten HA, de Vries RP	*Rutten L, et al.* (2009)** A single amino acid change (Y318F) in the L-arabitol dehydrogenase (LadA) from Aspergillus niger results in a significant increase in affinity for D-sorbitol. BMC Microbiol 9:166
Metz B, de Vries RP, Polak S, Seidl V, Seiboth B	*Metz B, et al.* (2009)** The Hypocrea jecorina (syn. Trichoderma reesei) lxr1 gene encodes a D-mannitol dehydrogenase and is not involved in L-arabinose catabolism. FEBS Lett 583(8):1309-13
Coutinho PM, Andersen MR, Kolenova K, vanKuyk PA, Benoit I, Gruben BS, Trejo-Aguilar B, Visser H, van Solingen P, Pakula T, Seiboth B, Battaglia E, Aguilar-Osorio G, de Jong JF, Ohm RA, Aguilar M, Henrissat B, Nielsen J, Stalbrand H, de Vries RP	*Coutinho PM, et al.* (2009)** Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae. Fungal Genet Biol 46 Suppl 1:S161-S169
Alberto F, Navarro D, de Vries RP, Asther M, Record E	*Alberto F, et al.* (2009)** Technical advance in fungal biotechnology: development of a miniaturized culture method and an automated high-throughput screening. Lett Appl Microbiol 49(2):278-82
de Vries RP, de Lange ES, Wosten HA, Stalpers JA	*de Vries RP, et al.* (2008)** Control and possible applications of a novel carrot-spoilage basidiomycete, Fibulorhizoctonia psychrophila. Antonie Van Leeuwenhoek 93(4):407-13
Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wosten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H	*Pel HJ, et al.* (2007)** Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol 25(2):221-31
Levin AM, de Vries RP, Conesa A, de Bekker C, Talon M, Menke HH, van Peij NN, Wosten HA	*Levin AM, et al.* (2007)** Spatial differentiation in the vegetative mycelium of Aspergillus niger. Eukaryot Cell 6(12):2311-22
de Vries RP, Burgers K, van de Vondervoort PJ, Frisvad JC, Samson RA, Visser J	*de Vries RP, et al.* (2004)** A new black Aspergillus species, A. vadensis, is a promising host for homologous and heterologous protein production. Appl Environ Microbiol 70(7):3954-9
de Vries RP, Flitter SJ, van de Vondervoort PJ, Chaveroche MK, Fontaine T, Fillinger S, Ruijter GJ, d'Enfert C, Visser J	*de Vries RP, et al.* (2003)** Glycerol dehydrogenase, encoded by gldB is essential for osmotolerance in Aspergillus nidulans. Mol Microbiol 49(1):131-41
de Groot MJ, van de Vondervoort PJ, de Vries RP, vanKuyk PA, Ruijter GJ, Visser J	*de Groot MJ, et al.* (2003)** Isolation and characterization of two specific regulatory Aspergillus niger mutants shows antagonistic regulation of arabinan and xylan metabolism. Microbiology 149(Pt 5):1183-91
Ruijter GJ, Bax M, Patel H, Flitter SJ, van de Vondervoort PJ, de Vries RP, vanKuyk PA, Visser J	*Ruijter GJ, et al.* (2003)** Mannitol is required for stress tolerance in Aspergillus niger conidiospores. Eukaryot Cell 2(4):690-8
de Vries RP, vanKuyk PA, Kester HC, Visser J	*de Vries RP, et al.* (2002)** The Aspergillus niger faeB gene encodes a second feruloyl esterase involved in pectin and xylan degradation and is specifically induced in the presence of aromatic compounds. Biochem J 363(Pt 2):377-86
de Vries RP, van de Vondervoort PJ, Hendriks L, van de Belt M, Visser J	*de Vries RP, et al.* (2002)** Regulation of the alpha-glucuronidase-encoding gene ( aguA) from Aspergillus niger. Mol Genet Genomics 268(1):96-102
de Vries RP, Jansen J, Aguilar G, Parenicova L, Joosten V, Wulfert F, Benen JA, Visser J	*de Vries RP, et al.* (2002)** Expression profiling of pectinolytic genes from Aspergillus niger. FEBS Lett 530(1-3):41-7
De Vries RP, Parenicova L, Hinz SW, Kester HC, Beldman G, Benen JA, Visser J	*De Vries RP, et al.* (2002)** The beta-1,4-endogalactanase A gene from Aspergillus niger is specifically induced on arabinose and galacturonic acid and plays an important role in the degradation of pectic hairy regions. Eur J Biochem 269(20):4985-93
vanKuyk PA, de Groot MJ, Ruijter GJ, de Vries RP, Visser J	*vanKuyk PA, et al.* (2001)** The Aspergillus niger D-xylulose kinase gene is co-expressed with genes encoding arabinan degrading enzymes, and is essential for growth on D-xylose and L-arabinose. Eur J Biochem 268(20):5414-23
Fillinger S, Chaveroche MK, van Dijck P, de Vries R, Ruijter G, Thevelein J, d'Enfert C	*Fillinger S, et al.* (2001)** Trehalose is required for the acquisition of tolerance to a variety of stresses in the filamentous fungus Aspergillus nidulans. Microbiology 147(Pt 7):1851-62
Ademark P, de Vries RP, Hagglund P, Stalbrand H, Visser J	*Ademark P, et al.* (2001)** Cloning and characterization of Aspergillus niger genes encoding an alpha-galactosidase and a beta-mannosidase involved in galactomannan degradation. Eur J Biochem 268(10):2982-90
de Vries RP, van den Broeck HC, Dekkers E, Manzanares P, de Graaff LH, Visser J	*de Vries RP, et al.* (1999)** Differential expression of three alpha-galactosidase genes and a single beta-galactosidase gene from Aspergillus niger. Appl Environ Microbiol 65(6):2453-60
de Vries RP, Visser J, de Graaff LH	*de Vries RP, et al.* (1999)** CreA modulates the XlnR-induced expression on xylose of Aspergillus niger genes involved in xylan degradation. Res Microbiol 150(4):281-5
de Vries RP, Visser J	de Vries RP and Visser J (1999) Regulation of the feruloyl esterase (faeA) gene from Aspergillus niger. Appl Environ Microbiol 65(12):5500-3
van Peij NN, Gielkens MM, de Vries RP, Visser J, de Graaff LH	*van Peij NN, et al.* (1998)** The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger. Appl Environ Microbiol 64(10):3615-9
de Vries RP, Michelsen B, Poulsen CH, Kroon PA, van den Heuvel RH, Faulds CB, Williamson G, van den Hombergh JP, Visser J	*de Vries RP, et al.* (1997)** The faeA genes from Aspergillus niger and Aspergillus tubingensis encode ferulic acid esterases involved in degradation of complex cell wall polysaccharides. Appl Environ Microbiol 63(12):4638-44
de Vries RP, Flipphi MJ, Witteveen CF, Visser J	*de Vries RP, et al.* (1994)** Characterization of an Aspergillus nidulans L-arabitol dehydrogenase mutant. FEMS Microbiol Lett 123(1-2):83-90

Author(s)

Citation

Dilokpimol A, Makela MR, Mansouri S, Belova O, Waterstraat M, Bunzel M, de Vries RP, Hilden KS

Dilokpimol A, et al. (2017) Expanding the feruloyl esterase gene family of Aspergillus niger by characterization of a feruloyl esterase, FaeC. N Biotechnol 37(Pt B):200-209

Benoit-Gelber I, Gruntjes T, Vinck A, van Veluw JG, Wosten HA, Boeren S, Vervoort JJ, de Vries RP

Benoit-Gelber I, et al. (2017) Mixed colonies of Aspergillus niger and Aspergillus oryzae cooperatively degrading wheat bran. Fungal Genet Biol 102:31-37

Alazi E, Khosravi C, Homan TG, du Pre S, Arentshorst M, Di Falco M, Pham TTM, Peng M, Aguilar-Pontes MV, Visser J, Tsang A, de Vries RP, Ram AFJ

Alazi E, et al. (2017) The pathway intermediate 2-keto-3-deoxy-L-galactonate mediates the induction of genes involved in D-galacturonic acid utilization in Aspergillus niger. FEBS Lett 591(10):1408-1418

Patyshakuliyeva A, Arentshorst M, Allijn IE, Ram AF, de Vries RP, Gelber IB

Patyshakuliyeva A, et al. (2016) Improving cellulase production by Aspergillus niger using adaptive evolution. Biotechnol Lett 38(6):969-74

Jiang Y, Duarte AV, van den Brink J, Wiebenga A, Zou G, Wang C, de Vries RP, Zhou Z, Benoit I

Jiang Y, et al. (2016) Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger. Biotechnol Lett 38(1):65-70

Wang F, Krijgsheld P, Hulsman M, de Bekker C, Muller WH, Reinders M, de Vries RP, Wosten HA

Wang F, et al. (2015) FluG affects secretion in colonies of Aspergillus niger. Antonie Van Leeuwenhoek 107(1):225-40

Niu J, Homan TG, Arentshorst M, de Vries RP, Visser J, Ram AF

Niu J, et al. (2015) The interaction of induction and repression mechanisms in the regulation of galacturonic acid-induced genes in Aspergillus niger. Fungal Genet Biol 82:32-42

Kowalczyk JE, Gruben BS, Battaglia E, Wiebenga A, Majoor E, de Vries RP

Kowalczyk JE, et al. (2015) Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression. PLoS One 10(11):e0143200

van den Brink J, Maitan-Alfenas GP, Zou G, Wang C, Zhou Z, Guimaraes VM, de Vries RP

van den Brink J, et al. (2014) Synergistic effect of Aspergillus niger and Trichoderma reesei enzyme sets on the saccharification of wheat straw and sugarcane bagasse. Biotechnol J 9(10):1329-38

Klaubauf S, Narang HM, Post H, Zhou M, Brunner K, Mach-Aigner AR, Mach RL, Heck AJ, Maarten Altelaar AF, de Vries RP

Klaubauf S, et al. (2014) Similar is not the same: differences in the function of the (hemi-)cellulolytic regulator XlnR (Xlr1/Xyr1) in filamentous fungi. Fungal Genet Biol 72:73-81

Culleton H, McKie VA, de Vries RP

Culleton H, et al. (2014) Overexpression, purification and characterisation of homologous alpha-L-arabinofuranosidase and endo-1,4-beta-D-glucanase in Aspergillus vadensis. J Ind Microbiol Biotechnol 41(11):1697-708

Battaglia E, Zhou M, de Vries RP

Battaglia E, et al. (2014) The transcriptional activators AraR and XlnR from Aspergillus niger regulate expression of pentose catabolic and pentose phosphate pathway genes. Res Microbiol 165(7):531-40

de Souza WR, Maitan-Alfenas GP, de Gouvea PF, Brown NA, Savoldi M, Battaglia E, Goldman MH, de Vries RP, Goldman GH

de Souza WR, et al. (2013) The influence of Aspergillus niger transcription factors AraR and XlnR in the gene expression during growth in D-xylose, L-arabinose and steam-exploded sugarcane bagasse. Fungal Genet Biol 60:29-45

Reddy SK, Rosengren A, Klaubauf S, Kulkarni T, Karlsson EN, de Vries RP, Stalbrand H

Reddy SK, et al. (2013) Phylogenetic analysis and substrate specificity of GH2 beta-mannosidases from Aspergillus species. FEBS Lett 587(21):3444-9

Nikolaev I, Farmer Hansen S, Madrid S, de Vries RP

Nikolaev I, et al. (2013) Disruption of the L-arabitol dehydrogenase encoding gene in Aspergillus tubingensis results in increased xylanase production. Biotechnol J 8(8):905-11

Culleton H, McKie V, de Vries RP

Culleton H, et al. (2013) Physiological and molecular aspects of degradation of plant polysaccharides by fungi: what have we learned from Aspergillus? Biotechnol J 8(8):884-94

Vankuyk PA, Benen JA, Wosten HA, Visser J, de Vries RP

vanKuyk PA, et al. (2012) A broader role for AmyR in Aspergillus niger: regulation of the utilisation of D-glucose or D-galactose containing oligo- and polysaccharides. Appl Microbiol Biotechnol 93(1):285-93

Gruben BS, Zhou M, de Vries RP

Gruben BS, et al. (2012) GalX regulates the D-galactose oxido-reductive pathway in Aspergillus niger. FEBS Lett 586(22):3980-5

Fekete E, de Vries RP, Seiboth B, vanKuyk PA, Sandor E, Fekete E, Metz B, Kubicek CP, Karaffa L

Fekete E, et al. (2012) D-Galactose uptake is nonfunctional in the conidiospores of Aspergillus niger. FEMS Microbiol Lett 329(2):198-203

Andersen MR, Giese M, de Vries RP, Nielsen J

Andersen MR, et al. (2012) Mapping the polysaccharide degradation potential of Aspergillus niger. BMC Genomics 13:313

de Souza WR, De Gouvea PF, Savoldi M, Malavazi I, de Souza Bernardes LA, Goldman MH, de Vries RP, de Castro Oliveira JV, Goldman GH

de Souza WR, et al. (2011) Transcriptome analysis of Aspergillus niger grown on sugarcane bagasse. Biotechnol Biofuels 4:40

Vinck A, de Bekker C, Ossin A, Ohm RA, de Vries RP, Wosten HA

Vinck A, et al. (2011) Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colonies. Environ Microbiol 13(1):216-25

Meijer M, Houbraken JA, Dalhuijsen S, Samson RA, de Vries RP

Meijer M, et al. (2011) Growth and hydrolase profiles can be used as characteristics to distinguish Aspergillus niger and other black aspergilli. Stud Mycol 69(1):19-30

Christensen U, Gruben BS, Madrid S, Mulder H, Nikolaev I, de Vries RP

Christensen U, et al. (2011) Unique regulatory mechanism for D-galactose utilization in Aspergillus nidulans. Appl Environ Microbiol 77(19):7084-7

Battaglia E, Hansen SF, Leendertse A, Madrid S, Mulder H, Nikolaev I, de Vries RP

Battaglia E, et al. (2011) Regulation of pentose utilisation by AraR, but not XlnR, differs in Aspergillus nidulans and Aspergillus niger. Appl Microbiol Biotechnol 91(2):387-97

Battaglia E, Visser L, Nijssen A, van Veluw GJ, Wosten HA, de Vries RP

Battaglia E, et al. (2011) Analysis of regulation of pentose utilisation in Aspergillus niger reveals evolutionary adaptations in Eurotiales. Stud Mycol 69(1):31-8

Aguilar-Osorio G, Vankuyk PA, Seiboth B, Blom D, Solomon PS, Vinck A, Kindt F, Wosten HA, de Vries RP

Aguilar-Osorio G, et al. (2010) Spatial and developmental differentiation of mannitol dehydrogenase and mannitol-1-phosphate dehydrogenase in Aspergillus niger. Eukaryot Cell 9(9):1398-402

Wadman MW, de Vries RP, Kalkhove SI, Veldink GA, Vliegenthart JF

Wadman MW, et al. (2009) Characterization of oxylipins and dioxygenase genes in the asexual fungus Aspergillus niger. BMC Microbiol 9:59

Rutten L, Ribot C, Trejo-Aguilar B, Wosten HA, de Vries RP

Rutten L, et al. (2009) A single amino acid change (Y318F) in the L-arabitol dehydrogenase (LadA) from Aspergillus niger results in a significant increase in affinity for D-sorbitol. BMC Microbiol 9:166

Metz B, de Vries RP, Polak S, Seidl V, Seiboth B

Metz B, et al. (2009) The Hypocrea jecorina (syn. Trichoderma reesei) lxr1 gene encodes a D-mannitol dehydrogenase and is not involved in L-arabinose catabolism. FEBS Lett 583(8):1309-13

Coutinho PM, Andersen MR, Kolenova K, vanKuyk PA, Benoit I, Gruben BS, Trejo-Aguilar B, Visser H, van Solingen P, Pakula T, Seiboth B, Battaglia E, Aguilar-Osorio G, de Jong JF, Ohm RA, Aguilar M, Henrissat B, Nielsen J, Stalbrand H, de Vries RP

Coutinho PM, et al. (2009) Post-genomic insights into the plant polysaccharide degradation potential of Aspergillus nidulans and comparison to Aspergillus niger and Aspergillus oryzae. Fungal Genet Biol 46 Suppl 1:S161-S169

Alberto F, Navarro D, de Vries RP, Asther M, Record E

Alberto F, et al. (2009) Technical advance in fungal biotechnology: development of a miniaturized culture method and an automated high-throughput screening. Lett Appl Microbiol 49(2):278-82

de Vries RP, de Lange ES, Wosten HA, Stalpers JA

de Vries RP, et al. (2008) Control and possible applications of a novel carrot-spoilage basidiomycete, Fibulorhizoctonia psychrophila. Antonie Van Leeuwenhoek 93(4):407-13

Pel HJ, de Winde JH, Archer DB, Dyer PS, Hofmann G, Schaap PJ, Turner G, de Vries RP, Albang R, Albermann K, Andersen MR, Bendtsen JD, Benen JA, van den Berg M, Breestraat S, Caddick MX, Contreras R, Cornell M, Coutinho PM, Danchin EG, Debets AJ, Dekker P, van Dijck PW, van Dijk A, Dijkhuizen L, Driessen AJ, d'Enfert C, Geysens S, Goosen C, Groot GS, de Groot PW, Guillemette T, Henrissat B, Herweijer M, van den Hombergh JP, van den Hondel CA, van der Heijden RT, van der Kaaij RM, Klis FM, Kools HJ, Kubicek CP, van Kuyk PA, Lauber J, Lu X, van der Maarel MJ, Meulenberg R, Menke H, Mortimer MA, Nielsen J, Oliver SG, Olsthoorn M, Pal K, van Peij NN, Ram AF, Rinas U, Roubos JA, Sagt CM, Schmoll M, Sun J, Ussery D, Varga J, Vervecken W, van de Vondervoort PJ, Wedler H, Wosten HA, Zeng AP, van Ooyen AJ, Visser J, Stam H

Pel HJ, et al. (2007) Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88. Nat Biotechnol 25(2):221-31

Levin AM, de Vries RP, Conesa A, de Bekker C, Talon M, Menke HH, van Peij NN, Wosten HA

Levin AM, et al. (2007) Spatial differentiation in the vegetative mycelium of Aspergillus niger. Eukaryot Cell 6(12):2311-22

de Vries RP, Burgers K, van de Vondervoort PJ, Frisvad JC, Samson RA, Visser J

de Vries RP, et al. (2004) A new black Aspergillus species, A. vadensis, is a promising host for homologous and heterologous protein production. Appl Environ Microbiol 70(7):3954-9

de Vries RP, Flitter SJ, van de Vondervoort PJ, Chaveroche MK, Fontaine T, Fillinger S, Ruijter GJ, d'Enfert C, Visser J

de Vries RP, et al. (2003) Glycerol dehydrogenase, encoded by gldB is essential for osmotolerance in Aspergillus nidulans. Mol Microbiol 49(1):131-41

de Groot MJ, van de Vondervoort PJ, de Vries RP, vanKuyk PA, Ruijter GJ, Visser J

de Groot MJ, et al. (2003) Isolation and characterization of two specific regulatory Aspergillus niger mutants shows antagonistic regulation of arabinan and xylan metabolism. Microbiology 149(Pt 5):1183-91

Ruijter GJ, Bax M, Patel H, Flitter SJ, van de Vondervoort PJ, de Vries RP, vanKuyk PA, Visser J

Ruijter GJ, et al. (2003) Mannitol is required for stress tolerance in Aspergillus niger conidiospores. Eukaryot Cell 2(4):690-8

de Vries RP, vanKuyk PA, Kester HC, Visser J

de Vries RP, et al. (2002) The Aspergillus niger faeB gene encodes a second feruloyl esterase involved in pectin and xylan degradation and is specifically induced in the presence of aromatic compounds. Biochem J 363(Pt 2):377-86

de Vries RP, van de Vondervoort PJ, Hendriks L, van de Belt M, Visser J

de Vries RP, et al. (2002) Regulation of the alpha-glucuronidase-encoding gene ( aguA) from Aspergillus niger. Mol Genet Genomics 268(1):96-102

de Vries RP, Jansen J, Aguilar G, Parenicova L, Joosten V, Wulfert F, Benen JA, Visser J

de Vries RP, et al. (2002) Expression profiling of pectinolytic genes from Aspergillus niger. FEBS Lett 530(1-3):41-7

De Vries RP, Parenicova L, Hinz SW, Kester HC, Beldman G, Benen JA, Visser J

De Vries RP, et al. (2002) The beta-1,4-endogalactanase A gene from Aspergillus niger is specifically induced on arabinose and galacturonic acid and plays an important role in the degradation of pectic hairy regions. Eur J Biochem 269(20):4985-93

vanKuyk PA, de Groot MJ, Ruijter GJ, de Vries RP, Visser J

vanKuyk PA, et al. (2001) The Aspergillus niger D-xylulose kinase gene is co-expressed with genes encoding arabinan degrading enzymes, and is essential for growth on D-xylose and L-arabinose. Eur J Biochem 268(20):5414-23

Fillinger S, Chaveroche MK, van Dijck P, de Vries R, Ruijter G, Thevelein J, d'Enfert C

Fillinger S, et al. (2001) Trehalose is required for the acquisition of tolerance to a variety of stresses in the filamentous fungus Aspergillus nidulans. Microbiology 147(Pt 7):1851-62

Ademark P, de Vries RP, Hagglund P, Stalbrand H, Visser J

Ademark P, et al. (2001) Cloning and characterization of Aspergillus niger genes encoding an alpha-galactosidase and a beta-mannosidase involved in galactomannan degradation. Eur J Biochem 268(10):2982-90

de Vries RP, van den Broeck HC, Dekkers E, Manzanares P, de Graaff LH, Visser J

de Vries RP, et al. (1999) Differential expression of three alpha-galactosidase genes and a single beta-galactosidase gene from Aspergillus niger. Appl Environ Microbiol 65(6):2453-60

de Vries RP, Visser J, de Graaff LH

de Vries RP, et al. (1999) CreA modulates the XlnR-induced expression on xylose of Aspergillus niger genes involved in xylan degradation. Res Microbiol 150(4):281-5

de Vries RP, Visser J

de Vries RP and Visser J (1999) Regulation of the feruloyl esterase (faeA) gene from Aspergillus niger. Appl Environ Microbiol 65(12):5500-3

van Peij NN, Gielkens MM, de Vries RP, Visser J, de Graaff LH

van Peij NN, et al. (1998) The transcriptional activator XlnR regulates both xylanolytic and endoglucanase gene expression in Aspergillus niger. Appl Environ Microbiol 64(10):3615-9

de Vries RP, Michelsen B, Poulsen CH, Kroon PA, van den Heuvel RH, Faulds CB, Williamson G, van den Hombergh JP, Visser J

de Vries RP, et al. (1997) The faeA genes from Aspergillus niger and Aspergillus tubingensis encode ferulic acid esterases involved in degradation of complex cell wall polysaccharides. Appl Environ Microbiol 63(12):4638-44

de Vries RP, Flipphi MJ, Witteveen CF, Visser J

de Vries RP, et al. (1994) Characterization of an Aspergillus nidulans L-arabitol dehydrogenase mutant. FEMS Microbiol Lett 123(1-2):83-90

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To cite AspGD, please use the following reference: Cerqueira GC, Arnaud MB, Inglis DO, Skrzypek MS, Binkley G, Simison M, Miyasato SR, Binkley J, Orvis J, Shah P, Wymore F, Sherlock G, Wortman JR (2014). The Aspergillus Genome Database: multispecies curation and incorporation of RNA-Seq data to improve structural gene annotations. Nucleic Acids Res 42 (1); D705-10; see How to cite AspGD.