Index of /download/gff/A_fumigatus_Af293

Icon  Name                                                                            Last modified      Size  Description
[DIR] Parent Directory - [TXT] A_fumigatus_Af293_current_features.gff 02-Feb-2020 07:18 14M [   ] A_fumigatus_Af293_current_features.gtf 02-Feb-2020 07:18 6.3M [   ] A_fumigatus_Af293_current_features_with_chromosome_sequences.gff.gz 02-Feb-2020 07:18 10M [TXT] A_fumigatus_Af293_current_intergenic.gff 02-Feb-2020 07:18 1.9M [TXT] A_fumigatus_Af293_version_s03-m05-r17_features.gff 02-Feb-2020 07:18 14M [   ] A_fumigatus_Af293_version_s03-m05-r17_features.gtf 02-Feb-2020 07:18 6.3M [   ] A_fumigatus_Af293_version_s03-m05-r17_features_with_chromosome_sequences.gff.gz 02-Feb-2020 07:18 10M [TXT] A_fumigatus_Af293_version_s03-m05-r17_intergenic.gff 02-Feb-2020 07:18 1.9M [TXT] Historic_features_A_fumigatus_Af293_version1.gff 29-Oct-2012 12:25 11M [DIR] archive/ 02-Feb-2020 07:18 -
This directory contains the downloadable AspGD files in the Generic
Feature Format (GFF).  These files describe features in AspGD, including 
chromosomes, ORFs, CDSs, introns, sequence gaps, intergenic regions, etc.

Please see http://www.sequenceontology.org/gff3.shtml for a detailed description 
of the Generic Feature Format (GFF).

The notation "version_sXX-mYY-rZZ" in the filenames indicates the genome version
to which data in the file corresponds. Detailed explanation about the genome
version notation can be found at: http://www.aspgd.org/help/SequenceHelp.shtml#Anids_versions 
Information pertaining to each version update for A. fumigatus Af293 can be found at:
http://www.aspergillusgenome.org/cgi-bin/genomeVersionHistory.pl?seq_source=A.%20fumigatus%20Af293

GFF files with "current" in their names are provided as stable filenames for
automated downloads. They are identical to (technically, symbolic links to) the
corresponding versioned files.

GFF files for previous genome versions are available in the archive sub-directory.

The following files are updated weekly:

A_fumigatus_Af293_version_sXX-mYY-rZZ_features.gff
    This file contains the current AspGD annotation of the A. fumigatus genome sequence.

A_fumigatus_Af293_version_sXX-mYY-rZZ_features_with_chromosome_sequences.gff.gz 
    This file contains the current AspGD annotation and the current genomic sequence
    of all chromosomes of the genome sequence. The annotations in this file and the
    previous file are the same. The chromosome sequences are specified 
    in the "##FASTA" section at the end of this file according to GFF3 file format 
    specifications (see http://www.sequenceontology.org/gff3.shtml).

A_fumigatus_Af293_version_sXX-mYY-rZZ_intergenic.gff
    This file lists the intergenic regions between coding regions in the
    chromosomes. This file also contains lengths of these intergenic sequences
    and GC and AT content of each intergenic region (percent GC and percent AT).

The following file is updated only with changes to the underlying genomic sequence:

Historic_features_A_fumigatus_Af293_version1.gff
    This file contains the annotation of the A. fumigatus genome that was originally
    loaded into AspGD, prior to the merge with the CADRE version of the genome. The
    features are mapped to the coordinates of the current genome version. For more
    details, please see: http://www.aspergillusgenome.org/cgi-bin/genomeVersionHistory.pl