Index of /download/gff/A_nidulans_FGSC_A4

Icon  Name                                                                             Last modified      Size  Description
[DIR] Parent Directory - [TXT] A_nidulans_FGSC_A4_current_features.gff 02-Feb-2020 07:07 14M [   ] A_nidulans_FGSC_A4_current_features.gtf 02-Feb-2020 07:07 7.0M [   ] A_nidulans_FGSC_A4_current_features_with_chromosome_sequences.gff.gz 02-Feb-2020 07:07 10M [TXT] A_nidulans_FGSC_A4_current_intergenic.gff 02-Feb-2020 07:07 2.1M [TXT] A_nidulans_FGSC_A4_version_s10-m04-r16_features.gff 02-Feb-2020 07:07 14M [   ] A_nidulans_FGSC_A4_version_s10-m04-r16_features.gtf 02-Feb-2020 07:07 7.0M [   ] A_nidulans_FGSC_A4_version_s10-m04-r16_features_with_chromosome_sequences.gff.gz 02-Feb-2020 07:07 10M [TXT] A_nidulans_FGSC_A4_version_s10-m04-r16_intergenic.gff 02-Feb-2020 07:07 2.1M [   ] Historic_A_nidulans_FGSC_A4_Broad_annotation.gff3 27-May-2010 10:07 9.8M [   ] Historic_A_nidulans_FGSC_A4_Broad_annotation_nonCanonical_format.gff 24-Jan-2013 15:32 9.1M [TXT] Historic_features_A_nidulans_FGSC_A4_Aug2012.gff 29-Oct-2012 12:26 16M [TXT] Historic_features_A_nidulans_FGSC_A4_Jan2013.gff 24-Jan-2013 11:05 11M [TXT] Historic_features_A_nidulans_FGSC_A4_version4.gff 24-Jan-2013 15:32 9.6M [DIR] archive/ 02-Feb-2020 07:07 -
This directory contains the downloadable AspGD files in the Generic
Feature Format (GFF).  These files describe features in AspGD, including 
chromosomes, ORFs, CDSs, introns, sequence gaps, intergenic regions, etc.

Please see http://www.sequenceontology.org/gff3.shtml for a detailed description 
of the Generic Feature Format (GFF).

The notation "version_sXX-mYY-rZZ" in the filenames indicates the genome version
to which data in the file corresponds. Detailed explanation about the genome
version notation can be found at: http://www.aspgd.org/help/SequenceHelp.shtml#Anids_versions 
Information pertaining to each version update for A. nidulans FGSC A4 can be found at:
http://www.aspergillusgenome.org/cgi-bin/genomeVersionHistory.pl?seq_source=A.%20nidulans%20FGSC%20A4

GFF files with "current" in their names are provided as stable filenames for
automated downloads. They are identical to (technically, symbolic links to) the
corresponding versioned files.

GFF files for previous genome versions are available in the archive sub-directory.

The following files are updated weekly:

A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_features.gff
    This file contains the current AspGD annotation of the A. nidulans genome sequence.

A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_features_with_chromosome_sequences.gff.gz 
    This file contains the current AspGD annotation and the current genomic sequence
    of all chromosomes of the genome sequence. The annotations in this file and the
    previous file are the same. The chromosome sequences are specified 
    in the "##FASTA" section at the end of this file according to GFF3 file format 
    specifications (see http://www.sequenceontology.org/gff3.shtml).

A_nidulans_FGSC_A4_version_sXX-mYY-rZZ_intergenic.gff
    This file lists the intergenic regions between coding regions in the
    chromosomes. This file also contains lengths of these intergenic sequences
    and GC and AT content of each intergenic region (percent GC and percent AT).

The following files are updated only with changes to the underlying genomic sequence:

Historic_features_A_nidulans_FGSC_A4_Aug2012.gff
    This file contains the annotation of the A. nidulans genome prior to the
    incorporation of PASA-based gene model changes.  The features are mapped
    to the coordinates of the current genome version. For more details, please see:
    http://www.aspergillusgenome.org/cgi-bin/reference/reference.pl?dbid=ASPL0000367584

Historic_features_A_nidulans_FGSC_A4_version4.gff
    This file contains the Version 4 annotation mapped to the coordinates 
    of the current genome version.  For more information please see:
    http://www.aspgd.org/help/SequenceHelp.shtml#version_4

Historic_A_nidulans_FGSC_A4_Broad_annotation.gff3 
    This file contains the set of annotation released by the Broad Institute (2009).  
    The features are mapped to the coordinates of the current genome version.
    Please see the AspGD Sequence Documentation
    (http://www.aspgd.org/help/SequenceHelp.shtml) for additional
    information about this release and its incorporation into Version 5 of
    the A. nidulans annotation.  Please note that this file contains the
    entire set of Broad annotation, including genes that could not be
    mapped to the chromosomal sequences and annotation updates that were
    not accepted for inclusion in Version 5, based on the criteria
    described in the Sequence Documentation.  The gene model
    representation used in this GFF file differs from the style used in
    other GFF files available for download; please contact us at
    http://www.aspergillusgenome.org/cgi-bin/suggestion
    with any questions.