Index of /download/large_scale_data/Iwashita_2012
Name Last modified Size Description
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aoryzae_iwashita_all_conditions.fastq.gz 13-Jul-2012 17:18 427M
Iwashita K. (2012). Unpublished A. oryzae RNA-Seq data from the laboratory
of Dr. K. Iwashita.
aoryzae_iwashita_all_conditions.fastq - A.oryzae RIB40 RNA-Seq ABI-Solid
reads generated by Dr. Kazuhiro Iwashita (National Research Institute of
Brewing, Hiroshima, Japan). RNA extracted from cell culture under the
following growth conditions: minimal medium+NO3, using normal conditions
and under ER (endoplasmic reticulum) stress. Reads derived from different
growth conditions were pooled together in a single dataset and converted
from colorspace to basespace by Tophat  (default parameters).
 Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice
junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11. Epub 2009
Mar 16.PMID: 19289445