Index of /download/large_scale_data/Iwashita_2012

Icon  Name                                     Last modified      Size  Description
[DIR] Parent Directory - [   ] aoryzae_iwashita_all_conditions.fastq.gz 13-Jul-2012 17:18 427M
Iwashita K. (2012). Unpublished A. oryzae RNA-Seq data from the laboratory 
of Dr. K. Iwashita. 


aoryzae_iwashita_all_conditions.fastq - A.oryzae RIB40 RNA-Seq ABI-Solid 
reads generated by Dr. Kazuhiro Iwashita (National Research Institute of 
Brewing, Hiroshima, Japan). RNA extracted from cell culture under the 
following growth conditions: minimal medium+NO3, using normal conditions 
and under ER (endoplasmic reticulum) stress. Reads derived from different 
growth conditions were pooled together in a single dataset and converted 
from colorspace to basespace by Tophat [1] (default parameters).

[1] Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice 
junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11. Epub 2009 
Mar 16.PMID: 19289445