Index of /download/large_scale_data/Sibthorp_2012

Icon  Name                                      Last modified      Size  Description
[DIR] Parent Directory - [   ] anidulans_caddick_all_conditions.fastq.gz 30-Aug-2012 09:47 3.6G
Sibthorp C, Caddick MX. (2012). Unpublished A. nidulans RNA-Seq data from 
the laboratory of Mark X. Caddick. 

See:  http://www.aspergillusgenome.org/cgi-bin/reference/reference.pl?dbid=ASPL0000367585

anidulans_caddick_all_conditions.fastq - A.nidulans FGSC A4 RNA-Seq ABI-
Solid reads generated by Dr. Mark Caddick (School of Biological Sciences, 
University of Liverpool). RNA extracted from cell culture under the 
following growth conditions: minimal medium+NO3, complete medium, minimal 
medium+NH4, nitrogen starvation for 4 and 72 hours. Reads derived from 
different growth conditions were pooled together in a single dataset and 
converted from colorspace to basespace by Tophat [1] (default parameters).

[1] Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice 
junctions with RNA-Seq. Bioinformatics. 2009 May 1;25(9):1105-11. Epub 2009 
Mar 16.PMID: 19289445