Index of /download/protein_properties

Icon  Name                                      Last modified      Size  Description
[DIR] Parent Directory - [   ] A_fumigatus_Af293_protein_properties.tab 28-Apr-2015 12:52 1.9M [   ] A_nidulans_FGSC_A4_protein_properties.tab 28-Apr-2015 12:52 2.0M [   ] A_niger_CBS_513_88_protein_properties.tab 28-Apr-2015 12:52 2.6M [   ] A_oryzae_RIB40_protein_properties.tab 28-Apr-2015 12:52 2.3M
This directory contains protein physicochemical property information for the
Aspergillus species curated at AspGD. The information is provided in a tab-delimited
file for each species:

A_nidulans_FGSC_A4_protein_properties.tab
A_fumigatus_Af293_protein_properties.tab
A_niger_CBS_513_88_protein_properties.tab
A_oryzae_RIB40_protein_properties.tab

The data columns are listed below. Descriptions of the different protein properties
and how they were calculated can be found here:

http://www.aspergillusgenome.org/help/Protein_Properties.shtml


FEATURE_NAME (systematic ORF name in AspGD)
DBID (Unique AspGD ID)
GENE_NAME
MOLECULAR_WEIGHT
PI (Protein isoelectric point)
CAI (Codon Adaptation Index)
PROTEIN_LENGTH
N_TERM_SEQ (The 7 amino-terminal residues)
C_TERM_SEQ (The 7 carboxy-terminal residues)
CODON_BIAS
FOP_SCORE (Frequency of Optimal Codons)
GRAVY_SCORE (Hydropathicity of Protein)
AROMATICITY_SCORE (Frequency of aromatic amino acids: Phe, Tyr, Trp)
ALA (Number of alanine residues in protein)
ARG (Number of arginine residues in protein)
ASN (Number of asparagine residues in protein)
ASP (Number of aspartate residues in protein)
CYS (Number of cysteine residues in protein)
GLN (Number of glutamine residues in protein)
GLU (Number of glutamate residues in protein)
GLY (Number of glycine residues in protein)
HIS (Number of histidine residues in protein)
ILE (Number of isoleucine residues in protein)
LEU (Number of leucine residues in protein)
LYS (Number of lysine residues in protein)
MET (Number of methionine residues in protein)
PHE (Number of phenylalanine residues in protein)
PRO (Number of proline residues in protein)
THR (Number of threonine residues in protein)
SER (Number of serine residues in protein)
TRP (Number of tryptophan residues in protein)
TYR (Number of tyrosine residues in protein)
VAL (Number of valine residues in protein)
ALIPHATIC_INDEX
INSTABILITY_INDEX
EXT_COEFF_OX (Fully oxidized extinction coefficient -- ALL cys residues are half-cystines)
EXT_COEFF_RED (Fully reduced extinction coefficient -- NO cys residues are half-cystines)
CARBON (Total number of carbon atoms in protein)
HYDROGEN (Total number of hydrogen atoms in protein)
NITROGEN (Total number of nitrogen atoms in protein)
OXYGEN (Total number of oxygen atoms in protein)
SULPHUR (Total number of sulphur atoms in protein)