Index of /download/sequence/A_fumigatus_A1163/current

Icon  Name                                                   Last modified      Size  Description
[DIR] Parent Directory - [   ] A_fumigatus_A1163_chromosomes.fasta.gz 16-Dec-2013 11:09 8.7M [   ] A_fumigatus_A1163_features_3000.fasta.gz 22-Jan-2014 14:05 24M [   ] A_fumigatus_A1163_not_feature.fasta.gz 16-Dec-2013 11:09 4.1M [   ] A_fumigatus_A1163_not_features.fasta.gz 01-Mar-2011 09:23 4.4M [   ] A_fumigatus_A1163_orf_coding.fasta.gz 16-Dec-2013 11:17 5.0M [   ] A_fumigatus_A1163_orf_genomic.fasta.gz 16-Dec-2013 11:17 5.5M [   ] A_fumigatus_A1163_orf_genomic_1000.fasta.gz 16-Dec-2013 11:17 12M [   ] A_fumigatus_A1163_orf_trans_all.fasta.gz 16-Dec-2013 11:17 3.4M [   ] A_fumigatus_A1163_other_features_genomic.fasta.gz 16-Dec-2013 11:17 15K [   ] A_fumigatus_A1163_other_features_genomic_1000.fasta.gz 16-Dec-2013 11:17 139K [   ] A_fumigatus_A1163_other_features_no_introns.fasta.gz 16-Dec-2013 11:17 15K
This directory contains the current version of Aspergillus fumigatus A1163
genomic sequences.

Sequenced by JCVI. Sequence and annotation downloaded from GenBank on 24-Feb-2009.
Gene models refined in 2013 at AspGD by PASA alignment with RNA-seq data

Last updated on  2013-12-16

* Chromosomal sequence:
                A_fumigatus_A1163_chromosomes.fasta.gz

* Sequence with no introns for all ORFs:
                A_fumigatus_A1163_orf_coding.fasta.gz

* Sequence with introns for all ORFs:
                A_fumigatus_A1163_orf_genomic.fasta.gz

* Sequence with introns and flanking 1000 bp upstream and
downstream for all ORFs:
                A_fumigatus_A1163_orf_genomic_1000.fasta.gz

* Translation of all ORFs:
                A_fumigatus_A1163_orf_trans_all.fasta.gz

* Sequence of other genomic features, including any introns:
                A_fumigatus_A1163_other_features_genomic.fasta.gz
Note: Currently for Aspergillus fumigatus A1163, these feature types are included in this file:
                mRNA
                tRNA

* Sequence of the above genomic features, with any introns removed:
                A_fumigatus_A1163_other_features_no_introns.fasta.gz

* Sequence of the above genomic features, plus region 1000 bp upstream and downstream:
                A_fumigatus_A1163_other_features_genomic_1000.fasta.gz

* Sequence between annotated chromosomal features:
                A_fumigatus_A1163_not_feature.fasta.gz
Note: Features excluded from this file include:
                Protein Coding Sequence
                mRNA
                tRNA

The files in this directory are in FASTA format.

All files are gzip compressed. There are several freely available
software options for decompressing gzipped files.  The software 
and other useful information is available on these web sites:
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/

and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html

Additional sequence documentation is found on the AspGD web site at:
http://www.aspergillusgenome.org/help/SequenceHelp.shtml

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