Index of /download/sequence/A_fumigatus_Af293/current
Name Last modified Size Description
![[DIR]](/icons/back.gif)
Parent Directory -
![[ ]](/icons/compressed.gif)
A_fumigatus_Af293_version_s03-m02-r04_chromosomes.fasta.gz 13-May-2012 07:02 8.4M
A_fumigatus_Af293_version_s03-m02-r04_not_feature.fasta.gz 13-May-2012 08:31 4.0M
A_fumigatus_Af293_version_s03-m02-r04_orf_coding.fasta.gz 13-May-2012 08:01 5.1M
A_fumigatus_Af293_version_s03-m02-r04_orf_genomic.fasta.gz 13-May-2012 07:17 5.5M
A_fumigatus_Af293_version_s03-m02-r04_orf_genomic_1000.fasta.gz 13-May-2012 07:10 12M
A_fumigatus_Af293_version_s03-m02-r04_orf_plus_intergenic.fasta.gz 13-May-2012 07:44 13M
A_fumigatus_Af293_version_s03-m02-r04_orf_trans_all.fasta.gz 13-May-2012 08:18 3.5M
A_fumigatus_Af293_version_s03-m02-r04_other_features_genomic.fasta.gz 13-May-2012 08:19 19K
A_fumigatus_Af293_version_s03-m02-r04_other_features_genomic_1000.fasta.gz 13-May-2012 08:19 199K
A_fumigatus_Af293_version_s03-m02-r04_other_features_no_introns.fasta.gz 13-May-2012 08:20 19K
A_fumigatus_Af293_version_s03-m02-r04_other_features_plus_intergenic.fasta.gz 13-May-2012 08:19 381K
![[DIR]](/icons/folder.gif)
EMBL_format/ 17-May-2012 13:33 -
This directory contains the current version of Aspergillus fumigatus Af293
genomic sequences.
The notation "sXX-mYY-rZZ" in the filename indicates the genome version to which data in
the file corresponds. Detailed explanation can
be found at: http://www.aspgd.org/help/SequenceHelp.shtml
Sequenced by JCVI/Sanger Institute/Institut Pasteur. Sequence and annotation originally downloaded from the Broad Institute Aspergillus download page on 23-Feb-2009.
* Chromosomal sequence:
A_fumigatus_Af293_sXX-mYY-rZZ_chromosomes.fasta.gz
* Sequence with no introns for all ORFs:
A_fumigatus_Af293_sXX-mYY-rZZ_orf_coding.fasta.gz
* Sequence with introns for all ORFs:
A_fumigatus_Af293_sXX-mYY-rZZ_orf_genomic.fasta.gz
* Sequence with introns and untranslated region 1000 bp upstream and
downstream for all ORFs:
A_fumigatus_Af293_sXX-mYY-rZZ_orf_genomic_1000.fasta.gz
* Sequences with introns plus upstream and downstream intergenic
sequence for all ORFs:
A_fumigatus_Af293_sXX-mYY-rZZ_orf_plus_intergenic.fasta.gz
* Translation of all ORFs:
A_fumigatus_Af293_sXX-mYY-rZZ_orf_trans_all.fasta.gz
* Sequence of other genomic features, including introns (if any):
A_fumigatus_Af293_sXX-mYY-rZZ_other_features_genomic.fasta.gz
Note: Currently for Aspergillus fumigatus Af293, only some non-ORF feature types have been annotated
* Sequence of the above genomic features, with introns (if any) removed:
A_fumigatus_Af293_sXX-mYY-rZZ_other_features_no_introns.fasta.gz
* Sequence of the above genomic features, plus region 1000 bp upstream and downstream:
A_fumigatus_Af293_sXX-mYY-rZZ_other_features_genomic_1000.fasta.gz
* Sequence of the above genomic features, plus region upstream and downstream
intergenic sequence
A_fumigatus_Af293_sXX-mYY-rZZ_other_features_plus_intergenic.fasta.gz
* Sequence between annotated chromosomal features:
A_fumigatus_Af293_sXX-mYY-rZZ_not_feature.fasta.gz
Note: Features excluded from this file include:
Protein Coding Sequence
misc_RNA
misc_feature
The files in this directory are in FASTA format.
All files are gzip compressed. There are several freely available
software options for decompressing gzipped files. The software
and other useful information is available on these web sites:
- WinZip (http://www.winzip.com/)
- Stuffit (http://www.stuffit.com/)
- Gzip (http://www.gzip.org/
and the gzip user's manual:
http://www.math.utah.edu/docs/info/gzip_toc.html
Additional sequence documentation is found on the AspGD web site at:
http://www.aspergillusgenome.org/help/SequenceHelp.shtml
------------------------------------------------